RetrogeneDB ID: | retro_meug_109 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_2769:32579..33603(-) | ||
Located in intron of: | ENSMEUG00000002029 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBQLN4 | ||
Ensembl ID: | ENSMEUG00000016573 | ||
Aliases: | None | ||
Description: | ubiquilin 4 [Source:HGNC Symbol;Acc:1237] |
Percent Identity: | 93.9 % |
Parental protein coverage: | 57.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QEMMRNQDRALSNLESIPGGYNALRRMYTDI-QEPMFSAAREQFGNNPFSSLSGNSDSSSSQPLRTENRE |
QEMMRNQDRA.SNLESIPGGYNAL.RMYTDI.QEPMFSAA.EQFGNNPFSSLSGNSDSSSSQPL.TENRE | |
Retrocopy | QEMMRNQDRAPSNLESIPGGYNALCRMYTDI<QEPMFSAAWEQFGNNPFSSLSGNSDSSSSQPLQTENRE |
Parental | PLPNPWSPSAPTSQAPGPAGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQGLLQQISENPQLM |
PLP.PWSPSAPTSQAPGPAGEGT.GSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQGLLQQISENPQLM | |
Retrocopy | PLPHPWSPSAPTSQAPGPAGEGTRGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQGLLQQISENPQLM |
Parental | QNMISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQ |
QNMISA.Y..SMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQ | |
Retrocopy | QNMISALYT*SMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQ |
Parental | ALLQIQQGLQTLQTEAPGLVPSLGNFGAPRIPPPPTGG-AGSEP-PITSQSTPASASSGGGTTSPQQQLM |
ALLQIQ.GLQ.LQTEAPGLVPSLGNFGAPRIPPPPTGG..G.EP.PITSQSTPASASSGGG.TSPQQQLM | |
Retrocopy | ALLQIQLGLQMLQTEAPGLVPSLGNFGAPRIPPPPTGGSSGPEP<PITSQSTPASASSGGGITSPQQQLM |
Parental | QQMIQLLAGGGNSQVQTPEIRFQQQLEQLNAMGFINREANLQALIATGGDINAAIERLLGSQPS |
QQMIQLLAGGGNSQVQTPEIRFQQQLEQLNAMGFINREAN.QALIAT.GDIN..IERLLGSQPS | |
Retrocopy | QQMIQLLAGGGNSQVQTPEIRFQQQLEQLNAMGFINREANVQALIATDGDINVSIERLLGSQPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000160803 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008916 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016573 | 1 retrocopy |
retro_meug_109 ,
|
Microcebus murinus | ENSMICG00000002222 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009983 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016961 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001444 | 1 retrocopy |