RetrogeneDB ID: | retro_hsap_2980 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:128730359..128730629(+) | ||
Located in intron of: | ENSG00000164070 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | INIP | ||
Ensembl ID: | ENSG00000148153 | ||
Aliases: | None | ||
Description: | INTS3 and NABP interacting protein [Source:HGNC Symbol;Acc:24994] |
Percent Identity: | 92.22 % |
Parental protein coverage: | 86.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVAILAELDKEKRKLLMQNQSSTNHPGASIALSRPSLNKDFRDHAEQQHIAAQQKAALQHAHAHSSGYFI |
.VAILAELDKEKR.LLMQNQSSTNHPGASIALSRP.LNKDF.DHAE.Q.IAAQQKAALQHAHAHS.GYFI | |
Retrocopy | QVAILAELDKEKRRLLMQNQSSTNHPGASIALSRPCLNKDFWDHAEPQYIAAQQKAALQHAHAHSFGYFI |
Parental | TQDSAFGNLILPVLPRLDPE |
TQDSAFGNLILPVLPRLDPE | |
Retrocopy | TQDSAFGNLILPVLPRLDPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .10 RPM | 18 .31 RPM |
bodymap2_adrenal | 0 .04 RPM | 24 .62 RPM |
bodymap2_brain | 0 .40 RPM | 38 .96 RPM |
bodymap2_breast | 0 .06 RPM | 23 .89 RPM |
bodymap2_colon | 0 .02 RPM | 14 .68 RPM |
bodymap2_heart | 0 .00 RPM | 14 .82 RPM |
bodymap2_kidney | 0 .25 RPM | 38 .24 RPM |
bodymap2_liver | 0 .06 RPM | 13 .52 RPM |
bodymap2_lung | 0 .09 RPM | 13 .71 RPM |
bodymap2_lymph_node | 0 .20 RPM | 24 .18 RPM |
bodymap2_ovary | 0 .21 RPM | 27 .91 RPM |
bodymap2_prostate | 0 .03 RPM | 20 .97 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .37 RPM |
bodymap2_testis | 0 .02 RPM | 21 .62 RPM |
bodymap2_thyroid | 0 .70 RPM | 26 .18 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 64 .93 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2015 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006841 | 1 retrocopy | |
Equus caballus | ENSECAG00000008524 | 1 retrocopy | |
Homo sapiens | ENSG00000148153 | 1 retrocopy |
retro_hsap_2980 ,
|
Microcebus murinus | ENSMICG00000001130 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016554 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016717 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000011577 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023472 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003661 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000002259 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .30 RPM |
CEU_NA11843 | 0 .17 RPM |
CEU_NA11930 | 0 .33 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .19 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .19 RPM |
CEU_NA12872 | 0 .14 RPM |
CEU_NA12873 | 0 .16 RPM |
FIN_HG00183 | 0 .52 RPM |
FIN_HG00277 | 0 .15 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .39 RPM |
FIN_HG00328 | 0 .14 RPM |
FIN_HG00338 | 0 .19 RPM |
FIN_HG00349 | 0 .17 RPM |
FIN_HG00375 | 0 .20 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .11 RPM |
GBR_HG00099 | 0 .23 RPM |
GBR_HG00111 | 0 .15 RPM |
GBR_HG00114 | 0 .26 RPM |
GBR_HG00119 | 0 .38 RPM |
GBR_HG00131 | 0 .37 RPM |
GBR_HG00133 | 0 .14 RPM |
GBR_HG00134 | 0 .24 RPM |
GBR_HG00137 | 0 .14 RPM |
GBR_HG00142 | 0 .42 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .11 RPM |
TSI_NA20513 | 0 .46 RPM |
TSI_NA20518 | 0 .31 RPM |
TSI_NA20532 | 0 .61 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .12 RPM |
TSI_NA20765 | 0 .29 RPM |
TSI_NA20771 | 0 .26 RPM |
TSI_NA20786 | 0 .13 RPM |
TSI_NA20798 | 0 .16 RPM |
YRI_NA18870 | 0 .24 RPM |
YRI_NA18907 | 0 .21 RPM |
YRI_NA18916 | 0 .17 RPM |
YRI_NA19093 | 0 .10 RPM |
YRI_NA19099 | 0 .19 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .12 RPM |
YRI_NA19213 | 0 .33 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .26 RPM |