RetrogeneDB ID: | retro_ocun_335 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:10020215..10020477(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | INIP | ||
Ensembl ID: | ENSOCUG00000016717 | ||
Aliases: | None | ||
Description: | INTS3 and NABP interacting protein [Source:HGNC Symbol;Acc:24994] |
Percent Identity: | 90. % |
Parental protein coverage: | 83.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAANPSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHPGAGIALSRPALSKD-FRDHAEQQHIAA-QQ |
MAANPSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNH.GAGIAL.RPAL.KD..RD.AEQQH.AA.QQ | |
Retrocopy | MAANPSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHAGAGIALWRPALNKD<LRDLAEQQHLAAVQQ |
Parental | KAA-LQHAHAHSSGYFITQD |
KAA.LQHAHAHSSGYFITQD | |
Retrocopy | KAA<LQHAHAHSSGYFITQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .08 RPM |
SRP017611_liver | 0 .00 RPM | 1 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006841 | 1 retrocopy | |
Equus caballus | ENSECAG00000008524 | 1 retrocopy | |
Homo sapiens | ENSG00000148153 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001130 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016554 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016717 | 1 retrocopy |
retro_ocun_335 ,
|
Oryzias latipes | ENSORLG00000011577 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023472 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003661 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000002259 | 1 retrocopy |