RetrogeneDB ID: | retro_hsap_3585 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:43674057..43674488(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218107 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EXOSC8 | ||
Ensembl ID: | ENSG00000120699 | ||
Aliases: | EXOSC8, CIP3, EAP2, OIP2, RRP43, Rrp43p, bA421P11.3, p9 | ||
Description: | exosome component 8 [Source:HGNC Symbol;Acc:17035] |
Percent Identity: | 70.07 % |
Parental protein coverage: | 52.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAAGFKTVEPLEY-YRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP |
M.AGFKT.EPL...YRRFLKE.C..D.RELGEFRTTTVN.GSISTA.GS.LVKLGNTTV.C.VKAEFAAP | |
Retrocopy | MVAGFKTTEPLVI<YRRFLKEICLADERELGEFRTTTVNTGSISTAVGSPLVKLGNTTVMCKVKAEFAAP |
Parental | STDAP-DKGYVVPNVDLPPLCSS-RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYC |
STDA...KG.V.P...LPPLCS..RF.SGPPGEE.Q..SQ...D..ENSQIIQK..LCISPGK....L.. | |
Retrocopy | STDAS<HKGSVAPTGALPPLCST>RFQSGPPGEEIQATSQITEDITENSQIIQKRNLCISPGKRA*ILCY |
Parental | DLICLDY |
DLI.L.. | |
Retrocopy | DLIRLSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 15 .43 RPM |
bodymap2_adrenal | 0 .00 RPM | 28 .29 RPM |
bodymap2_brain | 0 .00 RPM | 9 .70 RPM |
bodymap2_breast | 0 .00 RPM | 14 .46 RPM |
bodymap2_colon | 0 .00 RPM | 17 .07 RPM |
bodymap2_heart | 0 .00 RPM | 11 .67 RPM |
bodymap2_kidney | 0 .00 RPM | 18 .80 RPM |
bodymap2_liver | 0 .00 RPM | 11 .68 RPM |
bodymap2_lung | 0 .00 RPM | 17 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 20 .12 RPM |
bodymap2_ovary | 0 .00 RPM | 25 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 25 .86 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .91 RPM |
bodymap2_testis | 0 .08 RPM | 40 .65 RPM |
bodymap2_thyroid | 0 .00 RPM | 24 .56 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 14 .18 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CLM | POLR2A | 6:43674369..43674909 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2429 |
Gorilla gorilla | retro_ggor_2418 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000120699 | 1 retrocopy |
retro_hsap_3585 ,
|
Gorilla gorilla | ENSGGOG00000011902 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001745 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002745 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000005287 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005790 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014610 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012040 | 9 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |