RetrogeneDB ID: | retro_hsap_4116 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:122125598..122125989(-) | ||
Located in intron of: | ENSG00000253619 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000271219 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNPNAT1 | ||
Ensembl ID: | ENSG00000100522 | ||
Aliases: | GNPNAT1, GNPNAT, Gpnat1 | ||
Description: | glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] |
Percent Identity: | 79.39 % |
Parental protein coverage: | 70.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FKVLGQLT-ETGVVSPEQFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDV |
FK..GQLT.ETGVV.PEQFMKSFEH.KKSGDY.V.VVED.TLGQIVATATLIIE.KFIHSC.KRGR.EDV | |
Retrocopy | FKIRGQLT>ETGVVNPEQFMKSFEHIKKSGDYDVAVVEDATLGQIVATATLIIEQKFIHSCSKRGRIEDV |
Parental | VVSDECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVSEENYMCRRFL |
..SDECR.KQLG.LLL.TLTLLS.KLNC.KI.LE.LPQNVG.YKK.GY.VSEEN....RFL | |
Retrocopy | IISDECREKQLGMLLLPTLTLLS*KLNC*KISLEFLPQNVGLYKKSGYIVSEENRAGWRFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 23 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 20 .51 RPM |
bodymap2_brain | 0 .00 RPM | 18 .33 RPM |
bodymap2_breast | 0 .00 RPM | 25 .08 RPM |
bodymap2_colon | 0 .00 RPM | 22 .76 RPM |
bodymap2_heart | 0 .00 RPM | 8 .79 RPM |
bodymap2_kidney | 0 .00 RPM | 34 .08 RPM |
bodymap2_liver | 0 .00 RPM | 59 .67 RPM |
bodymap2_lung | 0 .00 RPM | 11 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .49 RPM |
bodymap2_ovary | 0 .00 RPM | 33 .35 RPM |
bodymap2_prostate | 0 .00 RPM | 17 .75 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 16 .15 RPM |
bodymap2_testis | 0 .00 RPM | 28 .41 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .49 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 13 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2795 |
Gorilla gorilla | retro_ggor_2762 |
Macaca mulatta | retro_mmul_2371 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |