RetrogeneDB ID: | retro_opri_544 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_16459:836..1169(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNPNAT1 | ||
Ensembl ID: | ENSOPRG00000016136 | ||
Aliases: | None | ||
Description: | glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 60.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VLGQLTETGVINPEQFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVS |
VLGQL.ETGVINPEQ.M.SFEHMKKSGDY..TVVEDVT.G.IVATATL..E..FIHSCA.R.......V. | |
Retrocopy | VLGQLMETGVINPEQVMTSFEHMKKSGDYSLTVVEDVTTGPIVATATLRLELTFIHSCAER-QSGRCCV* |
Parental | DECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKK |
DECRGKQL.KLL..TLTLLS.K.NC..I.LEC.PQNV.F.K. | |
Retrocopy | DECRGKQLFKLLVTTLTLLSNKQNCSNISLECVPQNVHFQKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |