RetrogeneDB ID: | retro_hsap_4857 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:71009238..71009400(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224617 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA4L2 | ||
Ensembl ID: | ENSG00000185633 | ||
Aliases: | NDUFA4L2, NUOMS | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 [Source:HGNC Symbol;Acc:29836] |
Percent Identity: | 51.85 % |
Parental protein coverage: | 62.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLAVSTDYKKLKKDRPDF |
A.L..L.L.L..P.V.WDRKN..E.WN...P.DQY.F.....DY.K.KK..PDF | |
Retrocopy | AGLHVLHLTLFNPKVSWDRKNTSESWNKRGPDDQYEFYSANADYSKRKKECPDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 24 .23 RPM |
bodymap2_adrenal | 0 .00 RPM | 14 .14 RPM |
bodymap2_brain | 0 .00 RPM | 6 .16 RPM |
bodymap2_breast | 0 .00 RPM | 13 .60 RPM |
bodymap2_colon | 0 .00 RPM | 15 .12 RPM |
bodymap2_heart | 0 .00 RPM | 11 .46 RPM |
bodymap2_kidney | 0 .00 RPM | 2 .38 RPM |
bodymap2_liver | 0 .00 RPM | 0 .44 RPM |
bodymap2_lung | 0 .00 RPM | 21 .55 RPM |
bodymap2_lymph_node | 0 .00 RPM | 11 .62 RPM |
bodymap2_ovary | 0 .00 RPM | 3 .60 RPM |
bodymap2_prostate | 0 .00 RPM | 6 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .53 RPM |
bodymap2_testis | 0 .00 RPM | 6 .75 RPM |
bodymap2_thyroid | 0 .00 RPM | 6 .55 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000004466 | 1 retrocopy | |
Homo sapiens | ENSG00000185633 | 2 retrocopies |
retro_hsap_4698, retro_hsap_4857 ,
|
Homo sapiens | ENSG00000189043 | 18 retrocopies |
retro_hsap_1459, retro_hsap_200, retro_hsap_2374, retro_hsap_2386, retro_hsap_259, retro_hsap_2685, retro_hsap_2726, retro_hsap_285, retro_hsap_3241, retro_hsap_4067, retro_hsap_4188, retro_hsap_4292, retro_hsap_4699, retro_hsap_4700, retro_hsap_4750, retro_hsap_4856, retro_hsap_650, retro_hsap_877,
|
Loxodonta africana | ENSLAFG00000021950 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014358 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017371 | 10 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020476 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015731 | 5 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |