>retro_hsap_501
GAAACACTTCGAATTGAAGAAGATGACCGACCTGAGTTATCATAATGGAAATGCAAGAAGTGGGCCTTACATATTTTAGC
AAGACTTTTTGAAAGATATGGAAGCTCTGGCAGTGTTTCCTAGGAGTATAATGAATTTGCTCAAGTATTTCTGAAGGAAT
TTGTTGTTGGTGTCCAGCAAGTTTTATTGAAAGTGTTATAACAGTACAACGAGAAGCAATATATGGCTCCTCAAGTTTTA
CAACAGACATTAAATTCTATTAATCAAGGAGTTTCTCATGCTCTCACCTGGAAGAATCTGAAGCCCCATATACAAGGCAT
TATCCAAGATGTTATTTTTCCATTGATGTGTTATACAGATGCTGATGAGGAACTTTGGGAAGAAGACCCTTACGAGTATA
TACGCATGAAGTTTGATGTGTCTGAAGATTTCATTTCCTTTGCCACTGCTGCCCAGAAGCTTTTGTTTACAGCCCATAGT
AAGAGGAAGGAGGTACTTCAAAAGACTATGGGATTTTGTTACCAGATTCTTACAGAACCCAATGCTGACCTTTGAAAAAA
AGATGGAGCCCTGCATGATTGGCTCTTTAGCTGAAACACTTCTGAAGAAAAAGATCTGTAATGATCAGATGGAATACATG
TTGCAGAATCATGTGTTCTCTCTCTTCAGCAGTGAACTAGGCTACATGAGAGCAAGGGCTTGCTGAGTACTTCACTATTT
TTGTGAAGTAAAGTTCAAAAGTGATCAGAACATTCAAACAGCTTTAGAGCTAACAAGAAGATGTCTGATTGATGACAGAG
ACATGCCTGTGAAAGTGGAAGCTGCCATTGTCCTTCAAGTATTTATCAGCAATCAAGAAAAATCTAAAGAATGTATCACA
GCATTTATCAGACCTGTAATGCAGGCTCTTCTTCATATTATAACAGAAACAGAAAATGATGACCTTACCAATGTAATTCA
GAAAATGATCTGTGAAAATAGTGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACAGTTGGCAATGACATTTAGCC
AAGTAATCCAGACAGGGCCAGATGAAGAAGGTAGTGATGACAAAGCAGTTACTGCTATGGGAATTCTGAATACAATTGAC
ACACTTCTTAGTGTAGTTGAAGATCATAAAGAGATAACCCAACAGCTTGAGGGAATCTGCTTACAGGTCATTGGTACTGT
TTTACAACAGCATGTCTCAGAATTCTATGAGGACATCTCTTTAGCGCATAGCCTGACATGTCAACAAGTGTCTCCACAGA
TGTGGCAGCTACTACCCCTTGTATTTGAAGTCTTTCAGCAAGATGGCTTTGATTACTTTACAGATATGATGCCCCTCCTT
TATAATTATGTAACAGTTGATACCAAGACACTTCTGTCTGATACCAAGTATCTTGAAATGATATACAGTATGTGCACAAA
AGATTCTTCCAGTAGTTGCAGGAGAAGATGCAGCGTGTCATACGGCAAAATTGTTAGAGGTCATCGTTCTGCAGTGCAAA
GGGCGTCACGTTGACCAGTGCATTCCCTTATTCGTGGAAGCAGCCTTAGAAAGACTGCCAAGAGAGGTTAAGACAAGTGA
ACTTTGAACTATGGGTATGCAAGTTGCAATTGCAGCTTTACATTATAATGCATACCTATTACTAAATACCTTAGAAAATC
TTCACTTCCCTAATAATGTTGAACCAGTTACAAATCATTTTATTAGT
ORF - retro_hsap_501 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.7 % |
Parental protein coverage: |
55.59 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | ETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYK |
| ETL..EEDDRPEL..WKCKKWALHILARLFERYGS.G.VS.EYNEFA.VFLK.F.VGVQQVLLKVL.QY. |
Retrocopy | ETLRIEEDDRPELS*WKCKKWALHILARLFERYGSSGSVS*EYNEFAQVFLKEFVVGVQQVLLKVL*QYN |
|
Parental | EKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDV |
| EKQYMAP.VLQQTLN.INQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELW.EDPYEYIRMKFDV |
Retrocopy | EKQYMAPQVLQQTLNSINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWEEDPYEYIRMKFDV |
|
Parental | FEDFISPTTAAQTLLFTACSKRKEVLQKTMG-FCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKD |
| .EDFIS..TAAQ.LLFTA.SKRKEVLQKTMG.F....L..P.....KK.....MIGSLAE.LLKKKI..D |
Retrocopy | SEDFISFATAAQKLLFTAHSKRKEVLQKTMG>FVTRFLQNPMLTFEKKMEPC-MIGSLAETLLKKKICND |
|
Parental | QMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIAL |
| QMEYMLQNHVF.LFSSELGYMRARAC.VLHYFCEVKFKSDQN.QTALELTRRCLIDDR.MPVKVEAAI.L |
Retrocopy | QMEYMLQNHVFSLFSSELGYMRARAC*VLHYFCEVKFKSDQNIQTALELTRRCLIDDRDMPVKVEAAIVL |
|
Parental | QVLISNQEKAKEYITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQV |
| QV.ISNQEK.KE.IT.FIRPVMQALLHII.ETENDDLTNVIQKMICE.SEEVTPIAVEMTQ.LAMTF.QV |
Retrocopy | QVFISNQEKSKECITAFIRPVMQALLHIITETENDDLTNVIQKMICENSEEVTPIAVEMTQQLAMTFSQV |
|
Parental | IQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVLEFYEEIFSLAHS |
| IQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHV.EFYE.I.SLAHS |
Retrocopy | IQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVSEFYEDI-SLAHS |
|
Parental | LTCQQVSPQMWQLLPLVFEVFQQDGFDYFTDMMPLLHNYVTVDTDTLLSDTKYLEMIYSMC-KKVLTGVA |
| LTCQQVSPQMWQLLPLVFEVFQQDGFDYFTDMMPLL.NYVTVDT.TLLSDTKYLEMIYSMC..K.L..VA |
Retrocopy | LTCQQVSPQMWQLLPLVFEVFQQDGFDYFTDMMPLLYNYVTVDTKTLLSDTKYLEMIYSMC>QKILPVVA |
|
Parental | GEDAECHAAKLLEVIILQCKGRGIDQCIPLFVEAALERLTREVKTSELRTMCLQVAIAALYYNPHLLLNT |
| GEDA.CH.AKLLEVI.LQCKGR..DQCIPLFVEAALERL.REVKTSEL.TM..QVAIAAL.YN..LLLNT |
Retrocopy | GEDAACHTAKLLEVIVLQCKGRHVDQCIPLFVEAALERLPREVKTSEL*TMGMQVAIAALHYNAYLLLNT |
|
Parental | LENLRFPNNVEPVTNHFIT |
| LENL.FPNNVEPVTNHFI. |
Retrocopy | LENLHFPNNVEPVTNHFIS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
bodymap2_adipose |
0 .00 RPM |
168 .72 RPM |
bodymap2_adrenal |
0 .02 RPM |
145 .84 RPM |
bodymap2_brain |
0 .49 RPM |
189 .11 RPM |
bodymap2_breast |
0 .00 RPM |
158 .85 RPM |
bodymap2_colon |
0 .00 RPM |
380 .72 RPM |
bodymap2_heart |
0 .02 RPM |
264 .34 RPM |
bodymap2_kidney |
0 .00 RPM |
196 .61 RPM |
bodymap2_liver |
0 .02 RPM |
90 .92 RPM |
bodymap2_lung |
0 .00 RPM |
283 .49 RPM |
bodymap2_lymph_node |
0 .00 RPM |
180 .95 RPM |
bodymap2_ovary |
0 .00 RPM |
241 .64 RPM |
bodymap2_prostate |
0 .02 RPM |
342 .12 RPM |
bodymap2_skeletal_muscle |
0 .09 RPM |
578 .72 RPM |
bodymap2_testis |
0 .02 RPM |
172 .90 RPM |
bodymap2_thyroid |
0 .04 RPM |
416 .58 RPM |
bodymap2_white_blood_cells |
0 .12 RPM |
157 .25 RPM |
RNA Polymerase II actvity near the 5' end of retro_hsap_501 was not detected
No EST(s) were mapped for retro_hsap_501 retrocopy.
No TSS is located nearby retro_hsap_501 retrocopy 5' end.
retro_hsap_501 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_hsap_501 has 1 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.
Expression level across human populations :
Library |
Retrogene expression |
CEU_NA11831 |
0 .02 RPM |
CEU_NA11843 |
0 .00 RPM |
CEU_NA11930 |
0 .00 RPM |
CEU_NA12004 |
0 .00 RPM |
CEU_NA12400 |
0 .00 RPM |
CEU_NA12751 |
0 .00 RPM |
CEU_NA12760 |
0 .04 RPM |
CEU_NA12827 |
0 .00 RPM |
CEU_NA12872 |
0 .00 RPM |
CEU_NA12873 |
0 .00 RPM |
FIN_HG00183 |
0 .00 RPM |
FIN_HG00277 |
0 .04 RPM |
FIN_HG00315 |
0 .00 RPM |
FIN_HG00321 |
0 .00 RPM |
FIN_HG00328 |
0 .00 RPM |
FIN_HG00338 |
0 .00 RPM |
FIN_HG00349 |
0 .03 RPM |
FIN_HG00375 |
0 .00 RPM |
FIN_HG00377 |
0 .00 RPM |
FIN_HG00378 |
0 .00 RPM |
GBR_HG00099 |
0 .00 RPM |
GBR_HG00111 |
0 .02 RPM |
GBR_HG00114 |
0 .00 RPM |
GBR_HG00119 |
0 .00 RPM |
GBR_HG00131 |
0 .00 RPM |
GBR_HG00133 |
0 .00 RPM |
GBR_HG00134 |
0 .00 RPM |
GBR_HG00137 |
0 .00 RPM |
GBR_HG00142 |
0 .00 RPM |
GBR_HG00143 |
0 .00 RPM |
TSI_NA20512 |
0 .00 RPM |
TSI_NA20513 |
0 .00 RPM |
TSI_NA20518 |
0 .06 RPM |
TSI_NA20532 |
0 .00 RPM |
TSI_NA20538 |
0 .00 RPM |
TSI_NA20756 |
0 .00 RPM |
TSI_NA20765 |
0 .00 RPM |
TSI_NA20771 |
0 .00 RPM |
TSI_NA20786 |
0 .00 RPM |
TSI_NA20798 |
0 .00 RPM |
YRI_NA18870 |
0 .07 RPM |
YRI_NA18907 |
0 .00 RPM |
YRI_NA18916 |
0 .00 RPM |
YRI_NA19093 |
0 .00 RPM |
YRI_NA19099 |
0 .00 RPM |
YRI_NA19114 |
0 .00 RPM |
YRI_NA19118 |
0 .00 RPM |
YRI_NA19213 |
0 .00 RPM |
YRI_NA19214 |
0 .00 RPM |
YRI_NA19223 |
0 .00 RPM |
Indel association:
No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (
PubMed).