>retro_pabe_1036
TTAAATCAGGGAGTTTCTCATGCTCTCACCTGGAAGAATCCAAAGCCCCATATACAAGGCATTATCCAAGATGTTATTTT
TCCATTGATGTGCTATACAGATGCTGATGAGGAACTTTGGCAAGAAGACCCTTACGAATATATCCGCATGAAGTTTGATG
TGTTTGAAGATTTCATTTCTCCTACCACTGCTGCCCAGACACTTTTGTTTACAGCCTGTAGTAAGAGGAAAGAGGTACTG
CAAAAGACTATGGGATTTTGTTACCAGATTCTTACAGAACCAAATGCTGACCCTCGAAAAAAAGATGGAGCCCTGCATAT
GATTGGCTCTTTAGCTGAAATACTTCTGAAGAAGAAGATCTATAAAGATCAGATGGAATGCATGTTGCAGAATCATGTAC
TCCCACTCTTTAGCAGTGAACTACGCTACATGAGAGCAAGGGCTTGTTGGGTACTTCACTATTTTTGTGAAGTGAAGTTC
GAAAGTGATCAGAACCTTCAAACAGCCTTAGAGCTAACAAGAAGATGTCTGATTGATGATAGAGAAATGCCTGTGAAAGT
GGAAGCTGCCATTGCCCTTCAAGTATTGATCAGCAATCAAGAAAAAGCCAAAGAATATATCACACCATTCATCAGACCTG
TAATGCAGGCTCTTCTTCATATTATAAGAGAAACAGAAAATGATGACCTTACCCATGTAATTCAGAAAATGATCTGTGAA
TATAGTGAAGAATTTACTCCTATTGCAGTAGAAATGACACAACATTTGGCAATGACATTTAACCAAGTAATCCAGATGGG
GCCAGATGAAGAAGGTAGTGATGACAAAGCAGTTACTGCTATGGGAATTCTGAATACAATTGACACACTTCTTAGTGTAG
CTGAAGATCATTAAGAGATAACCCAACAGCTCGAGGGAATCTGCTTACAGGTCGTTCCTACTGTTTTACAACAGCACGTC
TTAGAATTCCAGGAGGAGATCTTCTCTTTAGTGCACAGTTTGACATGACAACAAGTGTCTCCACAGATGTGGCAGTTACT
TCCCCTTGTATTTGAAGTCTTCCAGCAAGATGGCTTTGATTACTTTACAGATAATGATGCCCCTCCTTCATAATTATGTA
ACAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTTGAAAGATATACAGTATGTGCAAAAAGGTTCTCATAGGA
GTTGCAGGAGAAGATGTAGAGTGTCATGCAGCAACATTGTTAGAGGTCATCATTCTGCAGTGCAAAGGGTGTGGCACTGA
CCAG
ORF - retro_pabe_1036 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.42 % |
Parental protein coverage: |
59.2 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | INQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLF |
| .NQGVSHALTWKN.KPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLF |
Retrocopy | LNQGVSHALTWKNPKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLF |
|
Parental | TACSKRKEVLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSE |
| TACSKRKEVLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQME.MLQNHV.PLFSSE |
Retrocopy | TACSKRKEVLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQMECMLQNHVLPLFSSE |
|
Parental | LGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPF |
| L.YMRARACWVLHYFCEVKF.SDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPF |
Retrocopy | LRYMRARACWVLHYFCEVKFESDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPF |
|
Parental | IRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQTGPDEEGSDDKAVTA |
| IRPVMQALLHIIRETENDDLT.VIQKMICEYSEE.TPIAVEMTQHLAMTFNQVIQ.GPDEEGSDDKAVTA |
Retrocopy | IRPVMQALLHIIRETENDDLTHVIQKMICEYSEEFTPIAVEMTQHLAMTFNQVIQMGPDEEGSDDKAVTA |
|
Parental | MGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVLEFYEEIFSLAHSLTCQQVSPQMWQLLPLV |
| MGILNTIDTLLSV.EDH.EITQQLEGICLQV..TVLQQHVLEF.EEIFSL.HSLT.QQVSPQMWQLLPLV |
Retrocopy | MGILNTIDTLLSVAEDH*EITQQLEGICLQVVPTVLQQHVLEFQEEIFSLVHSLT*QQVSPQMWQLLPLV |
|
Parental | FEVFQQDGFDYFTD-MMPLLHNYVTVDTDTLLSDTKYLE-MIYSMCKKVLTGVAGEDAECHAAKLLEVII |
| FEVFQQDGFDYFTD.MMPLLHNYVTVDTDTLLSDTKYLE..IYSMCKKVL.GVAGED.ECHAA.LLEVII |
Retrocopy | FEVFQQDGFDYFTD>MMPLLHNYVTVDTDTLLSDTKYLE<KIYSMCKKVLIGVAGEDVECHAATLLEVII |
|
Parental | LQCKGRGIDQ |
| LQCKG.G.DQ |
Retrocopy | LQCKGCGTDQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .06 RPM |
45 .17 RPM |
SRP007412_cerebellum |
0 .00 RPM |
46 .57 RPM |
SRP007412_heart |
0 .00 RPM |
46 .51 RPM |
SRP007412_kidney |
0 .03 RPM |
37 .65 RPM |
SRP007412_liver |
0 .03 RPM |
22 .03 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_1036 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_1036 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_pabe_1036 has 1 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.