>retro_hsap_716
ACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGTGGGGAGCCTGAGTACCAAACCAGAGAG
TGATGTCCTCATGCAAGATTTCCACATGGTGGAGAGTATCTTCTTTCCCAGTGAAGGGAGCAACCTGACCCCTGCTCATC
ACTACAATGCCTTTCGTTTCAAGACCTATGCACCTGTTGCCTTCCGCTACTTCTGGGAGCTATTTGGTATCCGGCCCGAT
GATTACTTGTATTCCCTCTGCAGTGAGCCGCTGATTGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTGTTCTATGTGTC
CAGCGACGATGAGTTCATTGTTAAGACAGTCCGACATAAAGAAGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATACTACA
TAAACCTCAACCAGAACCCTCGGACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAGACAGGTGGCAAGAACATT
CGGATTGTGGTGATGAACAATCTTTTACCAAGATCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAG
GCGGCGGGCTTCCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATG
GTCTTTTTTTGGATGCTGACGTGCACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAG
ATAATGGATTATAGCCTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGCGAAACACAATA
CTCAGTTGATACTCGAAGACCAGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTCGAC
GGGGTGGCACCATGGAGACCGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAAAGGGGAAAGGCTTCTGCTTTAT
ATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGATACATGACGG
AGACACTGTCTCAGTGCATCGCCCAGGCTTCTATGCTGAATGGTTCCAGCGCTTCATGTGCAACACGGTATTTAAGAAGA
TTCCCTTGAAGCCTTCTCCTTCCAAAAAACTTCGGTCTGGCTCATCTTTCTCTCAGCGAGCAGGCTCCAGTGGCAACTCC
TGCATTACTTACCAGCCATTGGTCTCTGGGGAACACAAGGCACAAGTGACAACAAAGGCGGAAGTGGAGCCAGGTGTTCA
CCTTGGTTGTCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGGCTCACCTACTCCTGACCCCAGTT
TCTCACCTCTAGTTGAAGAGACTTTGCAAATGCTAACTACAAGT
ORF - retro_hsap_716 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.73 % |
Parental protein coverage: |
83.27 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRY |
| TTSSALKGAIQLGITHTVGSLSTKPE.DVLMQDF..VESIFFPSEGSNLTPAHHYN.FRFKTYAPVAFRY |
Retrocopy | TTSSALKGAIQLGITHTVGSLSTKPESDVLMQDFHMVESIFFPSEGSNLTPAHHYNAFRFKTYAPVAFRY |
|
Parental | FRELFGIRPDDYLYSLCSEPLIELCSSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNP |
| F.ELFGIRPDDYLYSLCSEPLIELCSSGASGSLFYVSSDDEFI.KTV.HKEAEFLQKLLPGYY.NLNQNP |
Retrocopy | FWELFGIRPDDYLYSLCSEPLIELCSSGASGSLFYVSSDDEFIVKTVRHKEAEFLQKLLPGYYINLNQNP |
|
Parental | RTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHIKYDLKGSTYKRRASQKEREKPLPTFKDLDFLQD |
| RTLLPKFYGLYCVQ.GGKNIRIVVMNNLLPRSVKMHIKYDLKGSTY.RRASQKEREKPLPTFKDLDFLQD |
Retrocopy | RTLLPKFYGLYCVQTGGKNIRIVVMNNLLPRSVKMHIKYDLKGSTYRRRASQKEREKPLPTFKDLDFLQD |
|
Parental | IPDGLFLDADMYNALCKTLQRDCLVLQSFKIMDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKAL |
| IPDGLFLDAD..NALCKTLQRDCLVLQSFKIMDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKAL |
Retrocopy | IPDGLFLDADVHNALCKTLQRDCLVLQSFKIMDYSLLMSIHNIDHAQREPLSSETQYSVDTRRPAPQKAL |
|
Parental | YSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALVHDGDTV |
| YSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKAL.HDGDTV |
Retrocopy | YSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKKLEHSWKALIHDGDTV |
|
Parental | SVHRPGFYAERFQRFMCNTVFKKIPLKPSPSKKFRSGSSFSRRAGSSGNSCITYQPSVSGEHKAQVTTKA |
| SVHRPGFYAE.FQRFMCNTVFKKIPLKPSPSKK.RSGSSFS.RAGSSGNSCITYQP.VSGEHKAQVTTKA |
Retrocopy | SVHRPGFYAEWFQRFMCNTVFKKIPLKPSPSKKLRSGSSFSQRAGSSGNSCITYQPLVSGEHKAQVTTKA |
|
Parental | EVEPGVHLGRPDVLPQTPPLEEISEGSPIPDPSFSPLVGETLQMLTTS |
| EVEPGVHLG.PDVLPQTPPLEEISEGSP.PDPSFSPLV.ETLQMLTTS |
Retrocopy | EVEPGVHLGCPDVLPQTPPLEEISEGSPTPDPSFSPLVEETLQMLTTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
bodymap2_adipose |
0 .34 RPM |
35 .38 RPM |
bodymap2_adrenal |
1 .17 RPM |
65 .85 RPM |
bodymap2_brain |
0 .26 RPM |
34 .90 RPM |
bodymap2_breast |
0 .49 RPM |
40 .88 RPM |
bodymap2_colon |
0 .08 RPM |
27 .28 RPM |
bodymap2_heart |
0 .35 RPM |
35 .39 RPM |
bodymap2_kidney |
0 .06 RPM |
44 .19 RPM |
bodymap2_liver |
0 .17 RPM |
19 .26 RPM |
bodymap2_lung |
1 .14 RPM |
58 .79 RPM |
bodymap2_lymph_node |
0 .22 RPM |
44 .62 RPM |
bodymap2_ovary |
1 .70 RPM |
58 .52 RPM |
bodymap2_prostate |
0 .38 RPM |
46 .56 RPM |
bodymap2_skeletal_muscle |
0 .07 RPM |
30 .17 RPM |
bodymap2_testis |
6 .81 RPM |
72 .26 RPM |
bodymap2_thyroid |
1 .11 RPM |
46 .57 RPM |
bodymap2_white_blood_cells |
0 .65 RPM |
50 .09 RPM |
RNA Polymerase II actvity near the 5' end of retro_hsap_716 was not detected
No EST(s) were mapped for retro_hsap_716 retrocopy.
No TSS is located nearby retro_hsap_716 retrocopy 5' end.
retro_hsap_716 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_hsap_716 has 3 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
6 parental genes, and
12 retrocopies.
Expression level across human populations :
Library |
Retrogene expression |
CEU_NA11831 |
0 .11 RPM |
CEU_NA11843 |
0 .11 RPM |
CEU_NA11930 |
0 .49 RPM |
CEU_NA12004 |
0 .00 RPM |
CEU_NA12400 |
0 .04 RPM |
CEU_NA12751 |
0 .34 RPM |
CEU_NA12760 |
0 .18 RPM |
CEU_NA12827 |
0 .14 RPM |
CEU_NA12872 |
0 .24 RPM |
CEU_NA12873 |
0 .26 RPM |
FIN_HG00183 |
0 .22 RPM |
FIN_HG00277 |
0 .15 RPM |
FIN_HG00315 |
0 .30 RPM |
FIN_HG00321 |
0 .12 RPM |
FIN_HG00328 |
0 .21 RPM |
FIN_HG00338 |
0 .11 RPM |
FIN_HG00349 |
0 .26 RPM |
FIN_HG00375 |
0 .22 RPM |
FIN_HG00377 |
0 .15 RPM |
FIN_HG00378 |
0 .11 RPM |
GBR_HG00099 |
0 .35 RPM |
GBR_HG00111 |
0 .13 RPM |
GBR_HG00114 |
0 .21 RPM |
GBR_HG00119 |
0 .48 RPM |
GBR_HG00131 |
0 .23 RPM |
GBR_HG00133 |
0 .24 RPM |
GBR_HG00134 |
0 .13 RPM |
GBR_HG00137 |
0 .14 RPM |
GBR_HG00142 |
0 .11 RPM |
GBR_HG00143 |
0 .13 RPM |
TSI_NA20512 |
0 .14 RPM |
TSI_NA20513 |
0 .19 RPM |
TSI_NA20518 |
0 .03 RPM |
TSI_NA20532 |
0 .10 RPM |
TSI_NA20538 |
0 .14 RPM |
TSI_NA20756 |
0 .00 RPM |
TSI_NA20765 |
0 .23 RPM |
TSI_NA20771 |
0 .28 RPM |
TSI_NA20786 |
0 .31 RPM |
TSI_NA20798 |
0 .31 RPM |
YRI_NA18870 |
0 .24 RPM |
YRI_NA18907 |
0 .17 RPM |
YRI_NA18916 |
0 .17 RPM |
YRI_NA19093 |
0 .34 RPM |
YRI_NA19099 |
0 .08 RPM |
YRI_NA19114 |
0 .00 RPM |
YRI_NA19118 |
0 .06 RPM |
YRI_NA19213 |
0 .22 RPM |
YRI_NA19214 |
0 .00 RPM |
YRI_NA19223 |
0 .00 RPM |
Indel association:
No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (
PubMed).