RetrogeneDB ID: | retro_hvul_27 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 3:428249567..428250392(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | MLOC_67686 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_52823 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.01 % |
Parental protein coverage: | 97.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AAVVVLFDFDKTIIQWDSDDWVITKLGAADAFKRLRPTMRWNSLMDRMMGELHAQGRSADDIRECLRSAP |
A.VVV.FDFDKTII..DSD.WV...LGA...F.RL.PTM.WN.L.D..MGELHAQG....D....LR.AP | |
Retrocopy | AGVVVVFDFDKTIIDVDSDNWVVDGLGATELFDRLLPTMPWNTLIDTVMGELHAQGKTLRDVADVLRAAP |
Parental | LDAHVLSAIRTASALGCDLKVVSDANSFFIATVLEHHGVLGCFSEINTNPARVDAQGRLRISPFHDPTSS |
.D.HV..AIR.A..LGCDL.V.SDAN.FFI..VL.HHG..G.FSEINTNP.RVDA.GRLRI.P.HD.... | |
Retrocopy | IDPHVVAAIRAAYSLGCDLRVLSDANRFFIEAVLDHHGLRGYFSEINTNPSRVDADGRLRIAPHHDFHAG |
Parental | PHGCSM--CPDNMCKGKIIQRIQEADSAKN--KHFIYIGDGKGDYCPSLKLREGDYVMPKENYPLWNLIS |
PHGC....CP.NMCKG....RI..........K.FIY.GDG.GDYCPSL.L...D..MP....P.W.LI. | |
Retrocopy | PHGCGLGTCPPNMCKGQVLDRIRASSATADGTKRFIYLGDGRGDYCPSLRLAREDFMMPRKGFPVWELIC |
Parental | SDPQLIKAEVHPWCSDEDFGRILLKLVNKLITLHAQASQLDYKCEMSNPVSTELGHHQTLPVPN |
..P.L..AEVHPW....D....LL.L.........Q...LD.K.E.S.PV....G....L.V.N | |
Retrocopy | ENPGLLQAEVHPWSDGKDMEETLLRLISRVLVEESQLLPLDCKLE-SLPVAVQDGMPMPLGVKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA001283 | 1 retrocopy | |
Brachypodium distachyon | BRADI2G42720 | 1 retrocopy | |
Zea mays | GRMZM2G035134 | 1 retrocopy | |
Hordeum vulgare | MLOC_52823 | 1 retrocopy |
retro_hvul_27 ,
|
Oryza brachyantha | OB01G31280 | 1 retrocopy | |
Oryza glumaepatula | OGLUM01G25430 | 1 retrocopy | |
Oryza meridionalis | OMERI01G19970 | 1 retrocopy | |
Oryza nivara | ONIVA01G24910 | 1 retrocopy | |
Oryza punctata | OPUNC01G21870 | 1 retrocopy | |
Oryza rufipogon | ORUFI01G24440 | 1 retrocopy |