RetrogeneDB ID: | retro_hvul_59 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 3:384284920..384286156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_76416 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.95 % |
Parental protein coverage: | 66.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKSPNRLVVDEA-TNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKTV |
KK..NRLVV..A.TNDDNSV..LHPDTME.L.LF.GDTVLLKGK.R..T.C..L.DDTCEE.K.R.NK.. | |
Retrocopy | KKAANRLVVEDASTNDDNSVCTLHPDTMEKLSLFKGDTVLLKGKRRHSTVCMALPDDTCEEHKMRINKVA |
Parental | RKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGM |
R.NLRVR..DVVSVH.C.DVKY..RVHILP.DDTVEGI.GNLFDA.LKPYF..A.RP..KGDLFLVRGGM | |
Retrocopy | RSNLRVRIADVVSVHLCHDVKYARRVHILPLDDTVEGIAGNLFDAYLKPYFVDAFRPVHKGDLFLVRGGM |
Parental | RSVEFKVIETDPA-EYCIVAPDTEIFCDGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQ |
RSVEFKV.E.DPA..YCIV.PDTEIFC.GEPVKREDEERLDDVGYDDVGG..K...QIRELVELPLRHPQ | |
Retrocopy | RSVEFKVMEIDPAADYCIVMPDTEIFCEGEPVKREDEERLDDVGYDDVGGMGKPLTQIRELVELPLRHPQ |
Parental | LFKSIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP |
.FKSIGVKPPKGILL.GPPGSGKTLIARAVANETGAFFFLINGPEIMSK.AGESESNLRKAFEEAEKNAP | |
Retrocopy | IFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAP |
Parental | SIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID |
SIIFIDEIDSIAP.REKT.GEVERRIVSQLLTLMDG.K.RAHVIVMGATNRPNSIDPALRRFGRFDREID | |
Retrocopy | SIIFIDEIDSIAPNREKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREID |
Parental | IGVPDEVGRLEVLRIHTKNMKLAEDVELEHISRDTHGYVGADLAALCTEAALQCIREKMDII |
IGVPDEVGRLEVLRIHTKNMKL.E.V.LE.I..DTHGYVGADLAALCTEAALQCIREKMD.I | |
Retrocopy | IGVPDEVGRLEVLRIHTKNMKLDEEVNLEVIAKDTHGYVGADLAALCTEAALQCIREKMDVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI1G74922 | 1 retrocopy | |
Leersia perrieri | LPERR03G03650 | 1 retrocopy | |
Hordeum vulgare | MLOC_74069 | 2 retrocopies | |
Hordeum vulgare | MLOC_76416 | 1 retrocopy |
retro_hvul_59 ,
|
Oryza glaberrima | ORGLA06G0255900 | 1 retrocopy | |
Populus trichocarpa | POPTR_0006s12740 | 1 retrocopy | |
Sorghum bicolor | Sb01g020910 | 1 retrocopy |