>retro_hvul_74
GTGATGCTGCCGATGGTCTACTTCCGGAAGAAGCACCCGGTGAACCTGGTGTTCCTGGGCATCTTCACCGTGTGCATCAG
CCTGTCGATAGGGCTGGGGTGCCTCACCAAGCGCGGGCCCATCATCTTCGAGGCGGCCGGCATGACGCTCGTCGTCGTGG
TCTCGCTCACCGCCTACACCTTCTGGGCGGCCAAGCGCGGACACGACTTCGAGTTCCTCGGCCCCTTCCTCTTCGCCGCG
TGCGTCATCCTCCTCCTCTACGCCATCGTCATTGTGCTCTTCCCCATGGGCAAGACGACGGTGCTCGTCTATGGCTGCAT
CGCCGCGCTCATCTTCTCCGCCTTCATCATCTACGACACCGACAACCTCATCAAGCGCTACACCTACGACGAGTATGTCG
CCGCCTCCATTACCCTCTACCTCGACATCATCAACCTCTTCAGGGCCATCCTAATCGCCCTCGAGGCCGCCGAC
ORF - retro_hvul_74 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.86 % |
Parental protein coverage: |
71.49 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VLCPLRYYHQKHPVNLILLGIFTVSISFAVGMTCAFTSGKIILEAAILTAVVVISLTAYTFWAAKRGHDF |
| V..P..Y...KHPVNL..LGIFTV.IS...G..C....G.II.EAA..T.VVV.SLTAYTFWAAKRGHDF |
Retrocopy | VMLPMVYFRKKHPVNLVFLGIFTVCISLSIGLGCLTKRGPIIFEAAGMTLVVVVSLTAYTFWAAKRGHDF |
|
Parental | NFLGPFLFGALMVLMMFSLIQIFFPLGKISVMIYGAVASIIFCGYIIFDTDNIIKRYTYDEYIWAAVSLY |
| .FLGPFLF.A...L.........FP.GK..V..YG..A..IF...II.DTDN.IKRYTYDEY..A...LY |
Retrocopy | EFLGPFLFAACVILLLYAIVIVLFPMGKTTVLVYGCIAALIFSAFIIYDTDNLIKRYTYDEYVAASITLY |
|
Parental | LDIINLFLNLMQILRAAD |
| LDIINLF......L.AAD |
Retrocopy | LDIINLFRAILIALEAAD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_74 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.