RetrogeneDB ID:

retro_hvul_78

Retrocopy
location
Organism:Barley (Hordeum vulgare)
Coordinates:5:81286222..81286699(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MLOC_34672
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_hvul_78
GTCCTGTGTCCTCTTTACTACTACTACCAGCGGCACCCGGTGAACCTGCTGCTGCTGGCGCTCTTCACAGTGGCCATCAG
CTTCGCGGTGGGGTTCACCTGCGTCTTCACCAAGGGGGAGGTGATCTTGGAGTCGGCCATCCTGACGACGGTGGTGGTGG
TGAGCCTGACGGCGTACACCTTCTGGGCGGCGAGCCACGGGCACAACTTCAACTTCCTGGGCCCGTTCCTGTTCGTGGCA
GTGATGATCCTCATGGTATTCACGCTCAGCCAGGCATTCTTCCCGCTGGGCCGCATCTCGCTCATGGTGTACAGCTGGCT
GGCGGCGCTCGTCTTCTACGGCTACATCATCTACGACACCGACAACCTCATCAAGCGCTACTCCTACGACGAGTACGTCT
GGGCCGCCGTCGCGCTCTACCTCGATGTCATCAACCTCTTCCTCTCCCTGCTCACCCTCTTCAGGGCATCCGATTCC

ORF - retro_hvul_78 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.44 %
Parental protein coverage: 71.95 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVLCPLRYYHQKHPVNLILLGIFTVSISFAVGMTCAFTSGKIILEAAILTAVVVISLTAYTFWAAKRGHDF
VLCPL.YY.Q.HPVNL.LL..FTV.ISFAVG.TC.FT.G..ILE.AILT.VVV.SLTAYTFWAA..GH.F
RetrocopyVLCPLYYYYQRHPVNLLLLALFTVAISFAVGFTCVFTKGEVILESAILTTVVVVSLTAYTFWAASHGHNF
ParentalNFLGPFLFGALMVLMMFSLIQIFFPLGKISVMIYGAVASIIFCGYIIFDTDNIIKRYTYDEYIWAAVSLY
NFLGPFLF.A.M.LM.F.L.Q.FFPLG.IS.M.Y...A...F.GYII.DTDN.IKRY.YDEY.WAAV.LY
RetrocopyNFLGPFLFVAVMILMVFTLSQAFFPLGRISLMVYSWLAALVFYGYIIYDTDNLIKRYSYDEYVWAAVALY
ParentalLDIINLFLNLMQILRAADS
LD.INLFL.L....RA.DS
RetrocopyLDVINLFLSLLTLFRASDS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_78 was not experimentally validated.

Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Hordeum vulgare MLOC_34672 3 retrocopies
retro_hvul_74, retro_hvul_78 , retro_hvul_79,



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