RetrogeneDB ID: | retro_itri_104 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393344.1:2622460..2623615(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000014334 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRKAR1A | ||
Ensembl ID: | ENSSTOG00000012903 | ||
Aliases: | None | ||
Description: | protein kinase, cAMP-dependent, regulatory, type I, alpha [Source:HGNC Symbol;Acc:9388] |
Percent Identity: | 84.9 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASGSTTASEEERSLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAKQIQNLQK |
MASGST.ASEEERSLRECELY.QKHNIQALLKDSIVQLCTARPERP..FLREYFEKLEKEEA...Q.... | |
Retrocopy | MASGSTAASEEERSLRECELYAQKHNIQALLKDSIVQLCTARPERPVTFLREYFEKLEKEEARLSQSQPT |
Parental | AGT---RTDSREEEISPPPPNPVVKGRRRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVL |
.G.....T........P....PVVKGRRRRGAISAEV.TEEDA.S.VRKVIPKD.KT.AALAKAIEKNVL | |
Retrocopy | PGPCPEETAPAQAQPAPAQAQPVVKGRRRRGAISAEVCTEEDAVSFVRKVIPKDFKTIAALAKAIEKNVL |
Parental | FSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIY |
FSHLD.NE..DIF.AMFPVSF.AGETVI.QGD.GD.FYVIDQGEMDVYVN.EW.T..GEGGSFGELALIY | |
Retrocopy | FSHLDENEKNDIFYAMFPVSFTAGETVIEQGDDGDVFYVIDQGEMDVYVNDEWTTALGEGGSFGELALIY |
Parental | GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFE |
GTPRAATVKAKT.VKLWGIDR.SYRRILMGSTL.KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFE | |
Retrocopy | GTPRAATVKAKTSVKLWGIDRSSYRRILMGSTLKKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFE |
Parental | DGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKC |
D.Q.I.VQGEPGDEFFIILEGSAAVLQRRSENE.FVEVGRLGPSDYFGEIALL.NRPRAATVVARGPLKC | |
Retrocopy | DRQNIMVQGEPGDEFFIILEGSAAVLQRRSENEDFVEVGRLGPSDYFGEIALLKNRPRAATVVARGPLKC |
Parental | VKLDRPRFERVLGPCSDILKRNIQQYNSFVSLSV |
VKLDR.RFERVLGPCSDILKRNIQQYN.F..LSV | |
Retrocopy | VKLDRLRFERVLGPCSDILKRNIQQYNIFMALSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008621 | 1 retrocopy | |
Homo sapiens | ENSG00000108946 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016507 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002194 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001982 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009579 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012903 | 1 retrocopy |
retro_itri_104 ,
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