RetrogeneDB ID: | retro_itri_1096 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393374.1:6416628..6416876(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTS | ||
Ensembl ID: | ENSSTOG00000013277 | ||
Aliases: | None | ||
Description: | 6-pyruvoyltetrahydropterin synthase [Source:HGNC Symbol;Acc:9689] |
Percent Identity: | 66.28 % |
Parental protein coverage: | 69.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | IDPVTGMVMNLTDLK-KYMEEAIMKPLD-HKNLDLDVPYFADVVSTTENVAVYIWE-NLQKFLPVGVLYK |
IDPVT.M..NLTDL..KY....IMK..D..KNLD.DV.YF.D..S.T.NVAVY..E.NL.KFL..GVLYK | |
Retrocopy | IDPVTNMNLNLTDLL<KYTK*TIMKSFD<SKNLDMDVLYFVDILSMTINVAVYT*E>NL*KFLLTGVLYK |
Parental | VKVHETDNNIVVYKGE |
VKV.ETD.NIVVY.GE | |
Retrocopy | VKVYETDKNIVVYEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000013 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008145 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015255 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013277 | 1 retrocopy |
retro_itri_1096 ,
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