RetrogeneDB ID: | retro_chof_1925 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_42443:2867..3267(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000000013 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.59 % |
Parental protein coverage: | 91.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AQLSRLVSFSATHRLHSKSLSNEENLKLFGK-CNNPNGHGHNYRXXXXXXXXIDPVTGMVMNLTDLKECM |
AQ.S...SFSA.HRLHSKSLS.EENLKLFG..CN.PNGHG.NY.........I.PVTGMVMNLT.LKE.M | |
Retrocopy | AQVSLSGSFSASHRLHSKSLSHEENLKLFGY<CNHPNGHGNNYKVAVTVHREIAPVTGMVMNLTELKEYM |
Parental | EQAIM-KPLDHKNLDLDVSYFPDVVSRTEDVAVYIWENLQKFLPVGVLHKVKVYETDNNIVVYKGE |
E..I..KPLDHKNLDL.VSYF.DVVS.TE.VAVY.WENL.K.LPVG...KVKV.ETDNNIVV...E | |
Retrocopy | EETIR<KPLDHKNLDLGVSYFTDVVSMTENVAVYKWENLPKCLPVGIPYKVKVHETDNNIVVFNRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000013 | 2 retrocopies |
retro_chof_1925 , retro_chof_2556,
|
Callithrix jacchus | ENSCJAG00000012437 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008145 | 2 retrocopies | |
Homo sapiens | ENSG00000150787 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015255 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007299 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000017191 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000003880 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004288 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013277 | 1 retrocopy |