>retro_itri_1616
TCCTCGGCGATCAGCCTGGCCGCCCCCAGGGACACGGACCACGAGCTCACGCAGAAGCTGGTGGAGACCCTGAAGCCCTT
CGGGGTGTTCGAGGAGGAAGAGGAGCTGCAGCGCAGGATTCTAATTTTGGAAAAACTAAACAACTTGGTGAAGGAGTGGA
TACGCGAAATCAGTGAAAGCAAGAGTCTTCCGCAAGCTGTGACTGAGAGTGTTGGGGGGAAAATTTTCACGTTCGGCTCT
TACAGACTGGGAGTGCACACGAAGGGTGCCGATATCGATGCGCTGTGCGTCGCGCCGAGACATGTCGACCGCAGCGACTT
TTTCACCTCATTTTATGATAAATTGAAACTACAGGAAGAAGTCAAAGATTTAAGGGCCGTTGAGGAGGCATTTGTACCAG
TGATCAAACTGTGTTTTGATGGGATAGAGATAGATATTTTGTTTGCAAGATTAGCATTGCAGACTATTCCAGAAGATTTG
GACTTAAGAGATGACAGTCTGCTTAAAAATTTAGATATTAGATGCATAAGAAGCCTAAATGGCTGCCGGGTAACTGATGA
AATTTTGCATCTAGTACCAAACATTGACAACTTCAGGCTAACTCTGAGAGCCATCAAATTGTGGGCCAAATGCCACAATA
TCTATTCCAATATATTAGGTTTCCTTGGAGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACCTGCCAGCTTTATCCAAAT
GCAATAGCATCAACTCTTGTTCGTAAATTTTTCCTGGTGTTTTCTGAATGGGAATGGCCAAATCCAGTGTTATTAAAAGA
GCCTGAAGAACGAAATCTTAATTTACCTGTGTGGGACCCAAGAGTAAATCCCAGTGATAGGTACCATCTTATGCCTATAA
TCACACCAGCATATCCACAGCAGAACTCCACATACAATGTTTCAGTTTCAACCAGGATGGTCATGATTGAGGAGTTTAAG
CAAGGGCTTGCTATCACACATGAAATTTTGCTGAACAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAGCTTCTTTCA
AAAGTACAAACATTATATTGTACTTCTGGCAAGTGCACCAACAGAAAAACAACATCTAGAATGGGTGGGCTTGGTGGAAT
CAAAGATCCGAATTCTGGTTGGGAGCTTAGAGAAGAATGAATTTATTACACTGGCACACGTGAATCCCCAGTCATTTCCA
GCACCCAAAGAAAATCCTGACAAGGAAGAATTTCGTACAATGTGGGTGATTGGGTTAGTGTTAAAAAAGCCAGAAAATTC
TGAAACTCTCAGTATCGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAATAGTAAGA
TGTTTGAGATGGATATGAAAATTGCTGCAATGCATTTAAGAAGAAAGGAGCTTCATCAACTACTCCCTAATCATGTTCTT
CAGAAAAAGAAAACACATTCTGCAGAAGGTATA
ORF - retro_itri_1616 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.52 % |
Parental protein coverage: |
66.08 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDVSESKNLPPSVVAT |
| .S.ISLA.P...DH..TQKL....KPFGVFE.EEEL..R...L.KLNNLVKEWI...SESK.LP..V... |
Retrocopy | SSAISLAAPRDTDHELTQKLVETLKPFGVFEEEEELQRRILILEKLNNLVKEWIREISESKSLPQAVTES |
|
Parental | VGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFD |
| VGGKIFTFGSYRLGVHTKGADIDALCVAPRHV.RSDFF.SF..KLK.Q.....LRAVE.AFVPVIK..FD |
Retrocopy | VGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFD |
|
Parental | GIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAK |
| GIEID..FARLA.QTI...LDLRDDS.L..LDIRCIRSLNGCRVTDEILHLVPN...FRLTLRA.KLWAK |
Retrocopy | GIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK |
|
Parental | RRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDP |
| ...IYSN.LGFLGGVSWAMLVARTCQLYPNA.ASTLV.KFFLVFS.WEWPNPVLLK.PEE.NLNLPVWDP |
Retrocopy | CHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDP |
|
Parental | RVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYR |
| RVNPSDRYHLMPIITPAYPQQNSTYNVS.STR.VM.EEFKQGLA.T.EIL..K..WSKL.E.P.FFQKY. |
Retrocopy | RVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYK |
|
Parental | HYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGII |
| HYIVL.ASA.TE..HLEWVGLVESKIR.LVG.LE.NEFITLAHVNPQSFP..KE.........MW..G.. |
Retrocopy | HYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLV |
|
Parental | FRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSD |
| ....EN.E...IDLTYDIQSFTDTVYRQA.N..M....MKI.A.H...K.LH..LP...LQKKK..S... |
Retrocopy | LKKPENSETLSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQLLPNHVLQKKKTHSAEG |
|
Parental | V |
| . |
Retrocopy | I |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1616 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1616 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
10 retrocopies.