RetrogeneDB ID: | retro_itri_1623 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393579.1:703749..703999(+) | ||
Located in intron of: | ENSSTOG00000011590 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA38 | ||
Ensembl ID: | ENSSTOG00000009039 | ||
Aliases: | None | ||
Description: | N(alpha)-acetyltransferase 38, NatC auxiliary subunit [Source:HGNC Symbol;Acc:20471] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | TVAVITSDGRMIVGTLKG-FDQTINLILDESHERVF-SSSQGVEQVVL-GLYIVRGDNVAVIGEIDEETD |
TVAVITSDGR..VGTLK..F.QTINLILDESHE....SSSQG...VVL..LY.VRGDN.AV.GE..EETD | |
Retrocopy | TVAVITSDGRRTVGTLKD<FHQTINLILDESHEQLT>SSSQGAGRVVL<SLYVVRGDNAAVTGETGEETD |
Parental | SALDLGNIRAE-PLNSVA |
SALDLGN..AE..LNS.A | |
Retrocopy | SALDLGNVPAE<TLNSAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001162 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000011594 | 1 retrocopy | |
Felis catus | ENSFCAG00000023642 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006837 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015822 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007100 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017359 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013377 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014809 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018435 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009039 | 3 retrocopies |
retro_itri_1623 , retro_itri_364, retro_itri_679,
|