RetrogeneDB ID: retro_mluc_161

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:1969738..1970029(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027762
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006837
• Aliases: None
• Description: None

Sequence

>retro_mluc_161
ATGACTTCCGCCCTGGAGAACTACATCAACCGAACTGTTGCTGTGATTACTTCAGATGGGAGGATGATAGTGGGAACACT
GAAAGGTTTTGACCAGACCATTAATTTGATTTTGGATGAAAGCCATGAACGAGTGTTCAGCTCTTCACAGGGAGTGGAAC
AAGTGGTACTAGGCTTGTACATCGTAAGTGGTGACAACGTTGCAGTCATTGGAGAAATTGATGAAGAAACAGATTCTGCG
CTTGATTTGGGGAATATTCGAGCAGAACCTCTGAACTCAGTAGCACACTGA

Alignment

ORF - retro_mluc_161 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.96 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI
          MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV.GDNVAVI
Retrocopy MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVSGDNVAVI

Parental  GEIDEETDSALDLGNIRAEPLNSVAH
          GEIDEETDSALDLGNIRAEPLNSVAH
Retrocopy GEIDEETDSALDLGNIRAEPLNSVAH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_161 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001162	1 retrocopy	retro_amel_1716,
Echinops telfairi	ENSETEG00000011594	1 retrocopy	retro_etel_491,
Felis catus	ENSFCAG00000023642	1 retrocopy	retro_fcat_1993,
Myotis lucifugus	ENSMLUG00000006837	1 retrocopy	retro_mluc_161 ,
Macaca mulatta	ENSMMUG00000015822	1 retrocopy	retro_mmul_2010,
Mustela putorius furo	ENSMPUG00000007100	1 retrocopy	retro_mputfur_1440,
Oryctolagus cuniculus	ENSOCUG00000017359	2 retrocopies	retro_ocun_1715, retro_ocun_954,
Otolemur garnettii	ENSOGAG00000013377	1 retrocopy	retro_ogar_1071,
Ochotona princeps	ENSOPRG00000014809	2 retrocopies	retro_opri_1033, retro_opri_227,
Sarcophilus harrisii	ENSSHAG00000018435	1 retrocopy	retro_shar_535,
Ictidomys tridecemlineatus	ENSSTOG00000009039	3 retrocopies	retro_itri_1623, retro_itri_364, retro_itri_679,