RetrogeneDB ID: | retro_itri_1680 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393630.1:1189610..1190144(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSSTOG00000012944 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 57.92 % |
Parental protein coverage: | 59.8 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MADDAGAAGGPGGPGGPGMGGRGGFRG-GFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRL |
MA....A..G.G.PGG.GMG..G.F......S.L.G....R.R.......A..G...D.....VTKLG.L | |
Retrocopy | MAENTDAVEGCGSPGGSGMGSHGDFHE<NLSSHL*GHCCRRSRVQSHCHRAHRGNTKDEDQ-SVTKLGYL |
Parental | VKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLK-DEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGH-V |
VK.MKIKSL.EIY..SL..KES..IDFFLG.SLK.DEVL..M.V.KQT..GQ.TR.KAFVAI.DYNG..V | |
Retrocopy | VKNMKIKSLGEIYFLSLHFKES*MIDFFLGTSLK<DEVLEMMSV*KQTLTGQWTRLKAFVAIHDYNGW<V |
Parental | GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV |
GL.VKCSKEVA.AI.GAIILAKLSI..V.R.Y.GNK..K..T. | |
Retrocopy | GLRVKCSKEVAIAIQGAIILAKLSIDSVQRDY*GNKTSKTVTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008877 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012944 | 4 retrocopies |