Parental gene:

RPS2, ENSACAG00000002549

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL344276.1:92071..101490(+)


>ENSACAG00000002549
ATGGCGGACGACGCCGGTGCTGCGGGAGGAGCTGGAGGGGCTGGTGGTGGTGCCGGAGGAGGAGGACCGGCGGCCCGAGG
CGGCTTCCGTGGGGGCTTTGGCAGCGGAGGCCGAGGAAGGGGCCGCGGACGGGGCAGGGGCCGGGGAAGAGGCCGTGGGG
CCCGCGGAGGCAAGGCCGAGGACAAAGAATGGATCCCAGTCACCAAACTTGGCCGCCTGGTCAAAGACATGAAGATCAAG
TCCCTGGAAGAGATCTACCTTTTCTCCCTTCCAATCAAGGAATCTGAAATCATTGACTTTTTCCTGGGCTCTTCTCTGAA
AGATGAGGTTCTGAAGATCATGCCAGTGCAGAAACAGACGCGTGCCGGTCAACGCACCCGGTTCAAGGCGTTTGTGGCCA
TCGGTGACTACAACGGCCACGTGGGTCTCGGCGTCAAATGCTCCAAAGAGGTGGCCACCGCCATCCGGGGGGCCATCATC
TTGGCCAAGCTGTCCATCGTACCAGTCAGGCGGGGCTACTGGGGCAACAAGATCGGCAAGCCCCACACCGTGCCTTGCAA
GGTCACCGGTCGGTGTGGCTCAGTCCTGGTGCGTCTCATCCCTGCACCACGTGGCACTGGGATCGTCTCTGCTCCGGTTC
CGAAGAAACTGCTAATGATGGCTGGCATTGACGACTGCTACACCTCGGCCAGGGGCTGCACAGCCACTTTGGGCAACTTT
GCCAAGGCCACCTTTGATGCCATCTCCAAGACCTACAGCTATCTGACCCCCGACCTGTGGAAGGAGACCATTTTCACCAA
ATCTCCATATCAGGAGTTTACAGACCACCTGGCAAAGACCCATGCCACCCGAGTCTCTGTGCAGAGAACCCAGGCAGCCG
CTGTGGCCACTACTTAA

Library Parental gene expression (RPM)
SRP009831_adrenal 1773 .24 RPM
SRP009831_brain 268 .42 RPM
SRP009831_dewlap 458 .32 RPM
SRP009831_embryo 1669 .41 RPM
SRP009831_heart 816 .47 RPM
SRP009831_liver 1116 .22 RPM
SRP009831_lung 1011 .13 RPM
SRP009831_ovary 271 .18 RPM
SRP009831_skeletal_muscle 609 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007366 ortholog_one2many 1 retrogene
retro_amel_305,
Bos taurus ENSBTAG00000009535 ortholog_one2one 7 retrogenes
retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Canis familiaris ENSCAFG00000019472 ortholog_one2many 19 retrogenes
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
Choloepus hoffmanni ENSCHOG00000012360 ortholog_one2one 9 retrogenes
retro_chof_1056, retro_chof_2398, retro_chof_2545, retro_chof_2607, retro_chof_368, retro_chof_378, retro_chof_535, retro_chof_919, retro_chof_989,
Callithrix jacchus ENSCJAG00000015267 ortholog_one2many 15 retrogenes
retro_cjac_1482, retro_cjac_1585, retro_cjac_1609, retro_cjac_1712, retro_cjac_1964, retro_cjac_2201, retro_cjac_2255, retro_cjac_2284, retro_cjac_2361, retro_cjac_2493, retro_cjac_2620, retro_cjac_274, retro_cjac_317, retro_cjac_3741, retro_cjac_4194,
Cavia porcellus ENSCPOG00000011651 ortholog_one2many 11 retrogenes
retro_cpor_1030, retro_cpor_1238, retro_cpor_1376, retro_cpor_1469, retro_cpor_1527, retro_cpor_177, retro_cpor_19, retro_cpor_437, retro_cpor_718, retro_cpor_769, retro_cpor_808,
Dipodomys ordii ENSDORG00000007375 ortholog_one2one 18 retrogenes
retro_dord_163, retro_dord_206, retro_dord_215, retro_dord_284, retro_dord_392, retro_dord_445, retro_dord_465, retro_dord_499, retro_dord_500, retro_dord_505, retro_dord_568, retro_dord_571, retro_dord_572, retro_dord_683, retro_dord_703, retro_dord_711, retro_dord_723, retro_dord_89,
Equus caballus ENSECAG00000009065 ortholog_one2one 7 retrogenes
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
Felis catus ENSFCAG00000029191 ortholog_one2many 6 retrogenes
retro_fcat_1245, retro_fcat_1328, retro_fcat_1606, retro_fcat_1610, retro_fcat_1737, retro_fcat_517,
Homo sapiens ENSG00000140988 ortholog_one2one 47 retrogenes
retro_hsap_1060, retro_hsap_136, retro_hsap_140, retro_hsap_141, retro_hsap_1443, retro_hsap_1444, retro_hsap_1457, retro_hsap_1463, retro_hsap_148, retro_hsap_1648, retro_hsap_1688, retro_hsap_1722, retro_hsap_1812, retro_hsap_1830, retro_hsap_1831, retro_hsap_1838, retro_hsap_1845, retro_hsap_1897, retro_hsap_1953, retro_hsap_1965, retro_hsap_1971, retro_hsap_2124, retro_hsap_2198, retro_hsap_2424, retro_hsap_244, retro_hsap_2483, retro_hsap_2486, retro_hsap_250, retro_hsap_282, retro_hsap_2871, retro_hsap_3035, retro_hsap_3097, retro_hsap_3106, retro_hsap_3182, retro_hsap_3211, retro_hsap_3369, retro_hsap_3464, retro_hsap_3584, retro_hsap_3779, retro_hsap_385, retro_hsap_4094, retro_hsap_4290, retro_hsap_435, retro_hsap_4811, retro_hsap_754, retro_hsap_761, retro_hsap_970,
Gorilla gorilla ENSGGOG00000009371 ortholog_one2many 5 retrogenes
retro_ggor_129, retro_ggor_1391, retro_ggor_1428, retro_ggor_168, retro_ggor_390,
Loxodonta africana ENSLAFG00000004696 ortholog_one2many 11 retrogenes
retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Macropus eugenii ENSMEUG00000004508 ortholog_one2one 2 retrogenes
retro_meug_156, retro_meug_2103,
Microcebus murinus ENSMICG00000012765 ortholog_one2one 28 retrogenes
retro_mmur_1192, retro_mmur_1273, retro_mmur_1283, retro_mmur_1296, retro_mmur_1407, retro_mmur_1417, retro_mmur_1440, retro_mmur_153, retro_mmur_1613, retro_mmur_205, retro_mmur_210, retro_mmur_226, retro_mmur_230, retro_mmur_259, retro_mmur_266, retro_mmur_463, retro_mmur_672, retro_mmur_698, retro_mmur_742, retro_mmur_802, retro_mmur_824, retro_mmur_829, retro_mmur_875, retro_mmur_953, retro_mmur_966, retro_mmur_969, retro_mmur_981, retro_mmur_99,
Myotis lucifugus ENSMLUG00000011660 ortholog_one2many 1 retrogene
retro_mluc_76,
Monodelphis domestica ENSMODG00000016077 ortholog_one2many 1 retrogene
retro_mdom_536,
Mustela putorius furo ENSMPUG00000015547 ortholog_one2many 11 retrogenes
retro_mputfur_1100, retro_mputfur_1209, retro_mputfur_1212, retro_mputfur_1214, retro_mputfur_1391, retro_mputfur_1497, retro_mputfur_1566, retro_mputfur_369, retro_mputfur_540, retro_mputfur_624, retro_mputfur_931,
Mus musculus ENSMUSG00000044533 ortholog_one2many 1 retrogene
retro_mmus_148,
Nomascus leucogenys ENSNLEG00000008877 ortholog_one2many 1 retrogene
retro_nleu_2895,
Otolemur garnettii ENSOGAG00000010098 ortholog_one2many 19 retrogenes
retro_ogar_1051, retro_ogar_1120, retro_ogar_1205, retro_ogar_1557, retro_ogar_1821, retro_ogar_1835, retro_ogar_1837, retro_ogar_1851, retro_ogar_2101, retro_ogar_2164, retro_ogar_2313, retro_ogar_2648, retro_ogar_2817, retro_ogar_2842, retro_ogar_2965, retro_ogar_3109, retro_ogar_3177, retro_ogar_3180, retro_ogar_794,
Procavia capensis ENSPCAG00000002090 ortholog_one2one 2 retrogenes
retro_pcap_251, retro_pcap_433,
Pteropus vampyrus ENSPVAG00000016704 ortholog_one2one 8 retrogenes
retro_pvam_1395, retro_pvam_1486, retro_pvam_221, retro_pvam_240, retro_pvam_34, retro_pvam_459, retro_pvam_521, retro_pvam_595,
Rattus norvegicus ENSRNOG00000014179 ortholog_one2many 12 retrogenes
retro_rnor_1882, retro_rnor_2191, retro_rnor_2257, retro_rnor_2274, retro_rnor_2903, retro_rnor_438, retro_rnor_631, retro_rnor_681, retro_rnor_690, retro_rnor_809, retro_rnor_810, retro_rnor_878,
Sarcophilus harrisii ENSSHAG00000015213 ortholog_one2many 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Sus scrofa ENSSSCG00000022859 ortholog_one2many 8 retrogenes
retro_sscr_280, retro_sscr_293, retro_sscr_412, retro_sscr_486, retro_sscr_729, retro_sscr_803, retro_sscr_950, retro_sscr_951,
Ictidomys tridecemlineatus ENSSTOG00000012944 ortholog_one2many 4 retrogenes
retro_itri_1239, retro_itri_1666, retro_itri_1680, retro_itri_221,
Tupaia belangeri ENSTBEG00000006726 ortholog_one2one 30 retrogenes
retro_tbel_1023, retro_tbel_1059, retro_tbel_1105, retro_tbel_1179, retro_tbel_129, retro_tbel_1444, retro_tbel_1545, retro_tbel_1615, retro_tbel_1622, retro_tbel_1786, retro_tbel_1910, retro_tbel_2294, retro_tbel_2749, retro_tbel_2786, retro_tbel_2973, retro_tbel_3179, retro_tbel_3314, retro_tbel_3509, retro_tbel_3523, retro_tbel_3682, retro_tbel_3701, retro_tbel_392, retro_tbel_4373, retro_tbel_463, retro_tbel_4674, retro_tbel_481, retro_tbel_586, retro_tbel_603, retro_tbel_639, retro_tbel_647,
Tarsius syrichta ENSTSYG00000013466 ortholog_one2many 52 retrogenes
retro_tsyr_1069, retro_tsyr_1078, retro_tsyr_1147, retro_tsyr_1301, retro_tsyr_131, retro_tsyr_1317, retro_tsyr_1466, retro_tsyr_1478, retro_tsyr_1498, retro_tsyr_1505, retro_tsyr_1509, retro_tsyr_1536, retro_tsyr_1564, retro_tsyr_1568, retro_tsyr_1588, retro_tsyr_1614, retro_tsyr_1636, retro_tsyr_1658, retro_tsyr_169, retro_tsyr_1789, retro_tsyr_1804, retro_tsyr_1827, retro_tsyr_186, retro_tsyr_1929, retro_tsyr_1935, retro_tsyr_2016, retro_tsyr_2175, retro_tsyr_290, retro_tsyr_349, retro_tsyr_415, retro_tsyr_417, retro_tsyr_463, retro_tsyr_472, retro_tsyr_525, retro_tsyr_527, retro_tsyr_545, retro_tsyr_568, retro_tsyr_604, retro_tsyr_605, retro_tsyr_609, retro_tsyr_61, retro_tsyr_622, retro_tsyr_638, retro_tsyr_650, retro_tsyr_672, retro_tsyr_689, retro_tsyr_691, retro_tsyr_699, retro_tsyr_768, retro_tsyr_773, retro_tsyr_922, retro_tsyr_980,
Tursiops truncatus ENSTTRG00000011393 ortholog_one2one 12 retrogenes
retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,
Vicugna pacos ENSVPAG00000006867 ortholog_one2one 6 retrogenes
retro_vpac_114, retro_vpac_164, retro_vpac_220, retro_vpac_354, retro_vpac_379, retro_vpac_518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_57 86.29 58.72
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Download FASTA sequences of all ENSACAG00000002549 retrocopies