RetrogeneDB ID: | retro_itri_1722 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393665.1:689511..690141(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020913 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM168A | ||
Ensembl ID: | ENSSTOG00000014507 | ||
Aliases: | None | ||
Description: | family with sequence similarity 168, member A [Source:HGNC Symbol;Acc:28999] |
Percent Identity: | 88.57 % |
Parental protein coverage: | 84.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PSLYPTNSPSYAPEFQFLHS---AYATLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYT |
P..YP...P.Y.P......S...A.ATLLMKQAWPQNSSSCGTEGTFHLPVDT.TENRTYQASSAAFRYT | |
Retrocopy | PTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAWPQNSSSCGTEGTFHLPVDTRTENRTYQASSAAFRYT |
Parental | AGTPYKVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPN |
AGTPYKVPPTQSNTAP.PYSPSPN.YQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQP. | |
Retrocopy | AGTPYKVPPTQSNTAPTPYSPSPNTYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPY |
Parental | SIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYVPPHW |
SIPSAIYPAPVAAPRTNG.AMGMV.GTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPA.SYVPPHW | |
Retrocopy | SIPSAIYPAPVAAPRTNGMAMGMVDGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPANSYVPPHW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016497 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000206 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014507 | 1 retrocopy |
retro_itri_1722 ,
|