RetrogeneDB ID: | retro_itri_1866 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394274.1:66156..66714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LRRC28 | ||
Ensembl ID: | ENSSTOG00000004380 | ||
Aliases: | None | ||
Description: | leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:28355] |
Percent Identity: | 91.94 % |
Parental protein coverage: | 50.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASELCKTITVARLEKHKNLFLNYRNLHHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVEL |
MASELCK.ITVARLEKHKNLFLNYRNLHHFPLELLKDEGLQYLERL.MKRNSLTTLP.NLAQKLPNLV.L | |
Retrocopy | MASELCKMITVARLEKHKNLFLNYRNLHHFPLELLKDEGLQYLERLCMKRNSLTTLP*NLAQKLPNLVKL |
Parental | YLHSNNIVVVPEAIGSLVKLQYLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLD |
YLHSNNIVVVPEAIG.LVKLQYL.LSDN.LEIVCP.IG.LRAL.HLRLANNQLQFLPPEVGDLKELQ.LD | |
Retrocopy | YLHSNNIVVVPEAIGFLVKLQYLGLSDNVLEIVCPDIGHLRALLHLRLANNQLQFLPPEVGDLKELQILD |
Parental | ISTNRLLTLPERLHLCLSLQYLTVDRNRLWYVPRHLCQLPSLNELS |
ISTNRLLTLPERLHLCLSLQYLTVD.NRLWYVP..LCQLPSLN.LS | |
Retrocopy | ISTNRLLTLPERLHLCLSLQYLTVDGNRLWYVPHRLCQLPSLNKLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016965 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006720 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012729 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004380 | 1 retrocopy |
retro_itri_1866 ,
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