RetrogeneDB ID: | retro_itri_1877 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394342.1:42631..43394(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX19B | ||
Ensembl ID: | ENSSTOG00000025733 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B [Source:HGNC Symbol;Acc:2742] |
Percent Identity: | 88.63 % |
Parental protein coverage: | 53.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SKLRFIDPRRIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEDSVWKFAQKVVPDP-NI |
SK.RFID.RRIKVFVL.EADVMIATQGHQDQSI.IQR.LPKNCQMLLFSATFEDSVWKFAQKVVPDP.NI | |
Retrocopy | SKFRFIDSRRIKVFVLNEADVMIATQGHQDQSIPIQRLLPKNCQMLLFSATFEDSVWKFAQKVVPDP>NI |
Parental | IKLKREEETLDTIKQYYVLCNNRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLS |
IKLK.EEETLDTIKQYY.LCNNRDEKFQA.CNLYGAITIAQA.IFCH.RKTASW.AAELSKEGHQVALLS | |
Retrocopy | IKLKHEEETLDTIKQYYILCNNRDEKFQAFCNLYGAITIAQAIIFCHIRKTASWFAAELSKEGHQVALLS |
Parental | GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG |
GEMMVEQRA.V.ERF.EGKEKVLVTTN.CARG.DVEQVSVVINFD..VDKDGNPD..TYLH..G.TGRFG | |
Retrocopy | GEMMVEQRATVMERF*EGKEKVLVTTNMCARGMDVEQVSVVINFDFSVDKDGNPDHQTYLHQTGHTGRFG |
Parental | KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN |
KRGLAVNMVDSKHSM.ILNRIQEHFN.KI..L.TDDLDEIEKIAN | |
Retrocopy | KRGLAVNMVDSKHSMSILNRIQEHFNRKIGKLNTDDLDEIEKIAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010216 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006938 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025733 | 1 retrocopy |
retro_itri_1877 ,
|
Tupaia belangeri | ENSTBEG00000009816 | 1 retrocopy |