RetrogeneDB ID: | retro_itri_1902 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH398260.1:524..1209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM23 | ||
Ensembl ID: | ENSSTOG00000010354 | ||
Aliases: | None | ||
Description: | RNA binding motif protein 23 [Source:HGNC Symbol;Acc:20155] |
Percent Identity: | 83.84 % |
Parental protein coverage: | 51.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NTTSNTGNSGSGTSVSTTTGETSKKKRSRSHSRSRDRKCS--RSRDR-HRRRNSRSRSRDRQRHHRSRSR |
NT.......G......T.....S.KKRSRSHSRSRDRK.S..R.RD..HR.RNSRSRSRD.QRHH.SRS. | |
Retrocopy | NTSFCLALGGNWPLQMTDSIQGSVKKRSRSHSRSRDRKHSRSRERDL>HRWRNSRSRSRDPQRHHHSRSH |
Parental | SWDRRHNSESRSRDRRREDRVRYRSPPLPTGRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQL |
SWDRRHNSESRSRDRR.EDRVRYRSPPLPTGRRYGHSKSP.FKEKSPVR.PIDNLSPEERDARTVFCMQL | |
Retrocopy | SWDRRHNSESRSRDRRPEDRVRYRSPPLPTGRRYGHSKSPRFKEKSPVR*PIDNLSPEERDARTVFCMQL |
Parental | AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQA |
AARI.PRDLEDFFSAVGKV..V.IISDRNSRRSKGI.YVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQA | |
Retrocopy | AARIWPRDLEDFFSAVGKVDYVCIISDRNSRRSKGIPYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQA |
Parental | EKNRLAAMANNLQKGTGGP |
EKNRLAAMANNLQKGTGGP | |
Retrocopy | EKNRLAAMANNLQKGTGGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000008482 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012923 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001092 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006151 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010354 | 1 retrocopy |
retro_itri_1902 ,
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