RetrogeneDB ID: retro_mluc_2430

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430381:62578..63459(+)
• Located in intron of: ENSMLUG00000007528

Retrocopy information

• Ensembl ID: ENSMLUG00000023486
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RBM23
• Ensembl ID: ENSMLUG00000012923
• Aliases: None
• Description: None

Sequence

>retro_mluc_2430
AAGAGTCGGAGCCATAGTAAAAGCAGGGATAGGAAGCGTAGTCGAGACCGGGGTCGGCATAGACGGAGAAGTAGTCGGAG
CCGAAGTCGAGATCGGCAGCATCGTCACCACAGCCAAAGCTGGGATCTTCAACATAGTAGTGAGTCCAGGAGTCAGGCCC
CACGTCCTGAGAATCGTGTGCACTGCAGGAGTCCACCACTTGCCGCTGGGCATAGGGATGGACACAGTAAGAGTCCTCAT
TCAGAGAAGAGTCCGGTCAGGGAGTCAATTGGTAATCTGAGTCCCGAGGAGCGTGGTGCCCGAACAGCTTTCTGTATGCA
GTTAGTCGCCCGCGTTCGGCCTCGAGACCTGGAGGACTTTTTCTCTGCTATTGGCAAGGTTTGTGACGTACGTGTCATCT
CAGATCGGAACTCACGTCGTTCTAAGGGCATTGCCTATGTGGAATTCTGTGAAATCCCGTCTGTGCCACTGGCCATTGGG
TTGACAGGGCAGCAGCTGCTGGGGGTGCCTATCATTGTACAGGCCTCACAGGCTGAGAAAAACCGACTGGCAGCCATGGC
CAACAACCTGCAGAAGGCAGTGGTGGACCAGTGCGCCTGTGTGTGGGCTCCCTGCACTGCAGTATTACCGAGGACATGCT
CCGGGGCATCTTTGAGCCCTTTGGCAAAATTGATAATATTGTCCTGATGAAGGACTCAGATACAGGCCGCTCTAAAGGTT
ATGGTTTCCTTACGTTCTCTGACTCTGAGTGTGCCCGACGGGCCCTGGAACAGTTGAATGGCCTTGAGCTTGCTGGTCGA
CCTATGAGAGTTGGCCATGTGACTGAGCGACTGGATGGTGGCACAGACATCACTTTTCCTGATGGAGACCAGAAGCTGAA
T

Alignment

ORF - retro_mluc_2430 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.19 %
• Parental protein coverage: 67.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KSRDRKRSRSQDRSRDRDRHRRRSSRSRSRDRQHRHHSQSWDHQHSSESRSRAPRRENRVHYRSPPLATG
          KSR....SR...RSRDR.RHRRRSSRSRSRDRQHRHHSQSWD.QHSSESRS.APR.ENRVH.RSPPLA.G
Retrocopy KSRSHSKSRDRKRSRDRGRHRRRSSRSRSRDRQHRHHSQSWDLQHSSESRSQAPRPENRVHCRSPPLAAG

Parental  HRYGHSKSPHFREKSPVRESIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAIGKVRDVRIISDRNSR
          HR.GHSKSPH..EKSPVRESI.NLSPEER.ART.FCMQL.AR.RPRDLEDFFSAIGKV.DVR.ISDRNSR
Retrocopy HRDGHSKSPH-SEKSPVRESIGNLSPEERGARTAFCMQLVARVRPRDLEDFFSAIGKVCDVRVISDRNSR

Parental  RSKGIAYVEFCEIQSVPLAIALTGQRLLGVPIIVQASQAEKNRLAAMANNLQK-GSGGPMRLCVGSLHCN
          RSKGIAYVEFCEI.SVPLAI.LTGQ.LLGVPIIVQASQAEKNRLAAMANNLQK.GSGGP.RLCVGSLHC.
Retrocopy RSKGIAYVEFCEIPSVPLAIGLTGQQLLGVPIIVQASQAEKNRLAAMANNLQK<GSGGPVRLCVGSLHCS

Parental  ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL
          ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGF.TFSDSECARRALEQLNG.ELAGRPMRVGHVTERL
Retrocopy ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFLTFSDSECARRALEQLNGLELAGRPMRVGHVTERL

Parental  DGGTDITFPDGDQELN
          DGGTDITFPDGDQ.LN
Retrocopy DGGTDITFPDGDQKLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2430 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008482	1 retrocopy	retro_cjac_1069,
Myotis lucifugus	ENSMLUG00000000238	1 retrocopy	retro_mluc_227,
Myotis lucifugus	ENSMLUG00000003000	1 retrocopy	retro_mluc_1152,
Myotis lucifugus	ENSMLUG00000012923	1 retrocopy	retro_mluc_2430 ,
Ochotona princeps	ENSOPRG00000001092	2 retrocopies	retro_opri_126, retro_opri_412,
Pan troglodytes	ENSPTRG00000006151	1 retrocopy	retro_ptro_3108,
Ictidomys tridecemlineatus	ENSSTOG00000010354	1 retrocopy	retro_itri_1902,