RetrogeneDB ID: | retro_itri_324 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:24524176..24524600(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSSTOG00000013572 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 69.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFACAKLACTPALIRAGSRVAYRPISVSVLSRPET--RPGKGSTVFNEAQNGERQLIRREFQTSVISRDI |
.F.CA.L.CT.ALI.AGSR.A..PIS.SVLS.P....RP....TVFN.A.NG..QLIR.EFQTS.ISR.I | |
Retrocopy | VFTCATLTCTLALICAGSRGAAQPISASVLSSPDNTERP*EDPTVFNGAWNGVCQLIRWEFQTSAISRNI |
Parental | DTAAKFIGA-GAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI |
.TAA.FIGA.GAAT...AGSGA.IGTVFGSLI.G..RNP.LKQQ.F.YA.LGFAL.EA.GLFCLMV.FLI | |
Retrocopy | GTAATFIGA>GAATARAAGSGASIGTVFGSLILG--RNPLLKQQPFLYATLGFALFEATGLFCLMVIFLI |
Parental | LFAM |
LFA. | |
Retrocopy | LFAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |