RetrogeneDB ID: | retro_ocun_949 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:55734037..55734456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSOCUG00000012164 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 96.45 % |
Parental protein coverage: | 99.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFACAKLACTPALIRAGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIRREF-QTSAISRDID |
MFACA.LACTPALI.AGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIRREF.QTSAIS.DID | |
Retrocopy | MFACARLACTPALI*AGSRVAYRPISASVLSRPEARTGEGSTVFNGAQNGVSQLIRREF<QTSAISKDID |
Parental | TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF |
TAA.FIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF | |
Retrocopy | TAANFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 180 .08 RPM |
SRP017611_kidney | 0 .10 RPM | 374 .92 RPM |
SRP017611_liver | 0 .23 RPM | 82 .78 RPM |