RetrogeneDB ID: | retro_itri_55 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393288.1:15229200..15229980(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022710 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000008527 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVRRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRSSSVIVRFVTNTTKESKQDLLERLKKLEFDISED |
MAVRRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRSSSVIVRFVTNTTKESKQDLLERLKKLEFDISED | |
Retrocopy | MAVRRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRSSSVIVRFVTNTTKESKQDLLERLKKLEFDISED |
Parental | EIFTSLTAARSLVEQKQVRPMLLVDDRALPDFKGIQTNDPNAVVIGLAPEHFHYQTLNQAFRLLLDGAPL |
EIFTSLTAARSLVEQKQVRPMLLVDDRALPDFKGIQTNDPNAVVIGLAPEHFHYQTLNQAFRLLLDGAPL | |
Retrocopy | EIFTSLTAARSLVEQKQVRPMLLVDDRALPDFKGIQTNDPNAVVIGLAPEHFHYQTLNQAFRLLLDGAPL |
Parental | IAIHKARYYKRKDGLALGPGPFVTALEYATDTSAIVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDV |
IAIHKARYYKRKDGLALGPGPFVTALEYATDTSAIVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDV | |
Retrocopy | IAIHKARYYKRKDGLALGPGPFVTALEYATDTSAIVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDV |
Parental | GGAQNAGMLGILVKTGKYRAADEEKISPPPYLTCESFPHAVDHILQHLL |
GGAQNAGMLGILVKTGKYRAADEEKISPPPYLTCESF.HAVDHILQHLL | |
Retrocopy | GGAQNAGMLGILVKTGKYRAADEEKISPPPYLTCESFSHAVDHILQHLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009397 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010999 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008527 | 1 retrocopy |
retro_itri_55 ,
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