RetrogeneDB ID: | retro_itri_727 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393314.1:13421419..13421853(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB4 | ||
Ensembl ID: | ENSSTOG00000021024 | ||
Aliases: | None | ||
Description: | MOB family member 4, phocein [Source:HGNC Symbol;Acc:17261] |
Percent Identity: | 71.23 % |
Parental protein coverage: | 64.44 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | ELNGLAVKLQSECHPDTCT-QMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSI |
.LNGL.VK...ECHPDT.T.Q..A.E.WIFL..AHKTP.ECPAIDY.RHTLD.A..LLNSNKYF.S..SI | |
Retrocopy | KLNGLSVKI*RECHPDTYT<QIIANEPWIFLWTAHKTPEECPAIDYSRHTLDYAS*LLNSNKYFQSSISI |
Parental | KESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNS |
K.SS..KLG.....IYRIFSHAYFHH.QIFD.Y.NETFLCH.FTK...KYN.M.KDNLIV.ILEE.VQNS | |
Retrocopy | KDSSIEKLG*LYCKIYRIFSHAYFHHWQIFD*YKNETFLCHQFTKLTIKYNFMLKDNLIVLILEEKVQNS |
Parental | VSGESE |
.S.ESE | |
Retrocopy | FSKESE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004020 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012746 | 2 retrocopies | |
Homo sapiens | ENSG00000115540 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009005 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000015430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016547 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012305 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005712 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000272 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016650 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013047 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017821 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021024 | 1 retrocopy |
retro_itri_727 ,
|
Tarsius syrichta | ENSTSYG00000001726 | 1 retrocopy |