RetrogeneDB ID: | retro_cpor_804 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_29:11189275..11189735(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB4 | ||
Ensembl ID: | ENSCPOG00000012746 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.13 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGA-ACLLNSNK |
.HL.QFCL.L..LAVKLQSECHP.TCTQ.TATEQWIFLCAA.KTP.EC.AIDYTRHTL.GA...LLNS.K | |
Retrocopy | QHLMQFCLKLDRLAVKLQSECHPHTCTQLTATEQWIFLCAAYKTPRECCAIDYTRHTLHGA<CLLLNSHK |
Parental | YFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCH-RFTKFVMKYNLMSKDNLIVP |
YFPSRVSIKESS.AKLGS.CRRIYRIFS..YFHH.QIFDEYEN..F.CH...TK.VMKYNL.SKDN.I.P | |
Retrocopy | YFPSRVSIKESSAAKLGSLCRRIYRIFSPVYFHHQQIFDEYENGAFSCH<LITKLVMKYNLVSKDNSILP |
Parental | ILEEEVQNSVSGESEA |
ILEEEVQN.VSGESEA | |
Retrocopy | ILEEEVQNPVSGESEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .01 RPM |
SRP017611_liver | 0 .00 RPM | 16 .80 RPM |
SRP040447_lung | 0 .00 RPM | 23 .43 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 29 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004020 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012746 | 2 retrocopies |
retro_cpor_318, retro_cpor_804 ,
|
Homo sapiens | ENSG00000115540 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009005 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000015430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016547 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012305 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005712 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000272 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016650 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013047 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017821 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021024 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001726 | 1 retrocopy |