RetrogeneDB ID: | retro_itri_746 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393317.1:11931937..11932348(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000015375 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.89 % |
Parental protein coverage: | 75.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ITYVYLKRNYTTMTSLGLRATLPAFMSSNRQIIESQSDDSDECRNRGSQDELPKSASGIRQRKRKEKMPK |
..Y.Y.KR.......L.LRATL..FMSSNRQIIES.S.DSDEC.N.GSQDE...SASGI.QRKR..KMPK | |
Retrocopy | VLY*YFKRSPSPL--LSLRATLSVFMSSNRQIIESLSSDSDECHNCGSQDESLESASGIQQRKR-QKMPK |
Parental | KPAMEENDPKGVPKAVGSEQAQRQLYPLGKASTSGKQSEKVSGPRKKNVNIWSHRLRERKYLVAYEEISD |
KPA.EEND....PK.V........LYPL.K.ST...QSEKVSG.R.K.V.I.SHR..ERK.L.AYEEISD | |
Retrocopy | KPAREEND----PKEVQKQLTGNRLYPLRKPSTFWNQSEKVSGSRMKIVSI*SHRFWERKNLLAYEEISD |
Parental | PEEE |
PEEE | |
Retrocopy | PEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014776 | 1 retrocopy | |
Homo sapiens | ENSG00000204645 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026107 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019164 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003504 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020365 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021857 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015375 | 3 retrocopies |
retro_itri_1394, retro_itri_1855, retro_itri_746 ,
|