RetrogeneDB ID: | retro_itri_904 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393341.1:2883585..2883884(+) | ||
Located in intron of: | ENSSTOG00000008770 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CUTA | ||
Ensembl ID: | ENSSTOG00000002474 | ||
Aliases: | None | ||
Description: | cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:21101] |
Percent Identity: | 91.26 % |
Parental protein coverage: | 57.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGPASAALLGGGAALFLSCLWMPALLPVASRLLLLPRALLTMASGSPPSQPTTASGSSYVPGSV-SAAFV |
GG.ASAALLGGGAALFLSCLWMPALLPVASRLLLLPRALLTMASGSPPSQPT.ASGSSYVPGSV.SAAFV | |
Retrocopy | GGQASAALLGGGAALFLSCLWMPALLPVASRLLLLPRALLTMASGSPPSQPTMASGSSYVPGSV<SAAFV |
Parental | TCPNEKVAKEIARALVEKRLAACVNLIPQITSI |
TCPNEKVAKEIAR.LV.KRL...VNLIPQITS. | |
Retrocopy | TCPNEKVAKEIARSLV*KRLT--VNLIPQITSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009616 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015556 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002474 | 1 retrocopy |
retro_itri_904 ,
|