>retro_itri_923
ATGCCGATGAACCAGGTAAAGCCCTATCACGGGGGGCGGCACACCGCTGCGTGTAGAGCTTCCCACCTGCGTGTACCGGC
TCCCCAACATGCACTGTAGGACCGGCAGCCCCGCGCTCGAGGCCGGCCACGTGCAGGAAGCATCTGACCCCTCTCTGCAA
GCTCTTGAGTCCCGCCAAGATGATATTTTTAAAACGTTTGTATGAGTTGAAAGCTGCAGTCGATGGTCTCTCCAAGATGA
TTCACACACCAGATGCAGACATGGATGTGACAAACATCATGCAAGCTGATGAGCCCACTTCTTTCACAACCAATGCATTC
GATTTGCATTCAGTGCTTGGAAAGGACTATGGAGCGCTGAAAGACAACGTGATCAACGCAAACCCTGCCTCCCCTCCTCT
CTGCCTGCTCGTGCTGCATAGGTAGCTCTGTGAGAGCTACAGGGTGCTATCCACTGTGCACACACATTCATCAGTGAAGA
GTGTGCCTGAGACCCTTCTCAAGTGCTTTGGGGAACAGACTAGGAAAGAGCCCCGTCATGAGTATCAGCTGGGCTTCACT
TTAATTTGGAAGAATGTGCCCAAGACTCAAATGAAGTTTAGTGTCCAGACAATGTGCTCCATTGAAGGAGAAGGGAACAT
TGCACTTTTCTTGTTCTCTCTGTTTGGCCAGAAGCATAATGCCATCAACTCAACCCTCATAGATAGCAGGGTAGATATCG
ATATTTTTCAGCTAAAAGAGGGGAGCAGTAAAGAAAAGGTAGCTGTTTTCGCTCCATGAACTCTGCTCTGGGGAGGAGCC
CGTGGCTGGTTGGGAACGAGCTCACCATGGCAGATGTTGCGCTGTGGTGTGTGCGCCAGCAGACAGGAGGCTGCAGTGCC
ORF - retro_itri_923 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.2 % |
Parental protein coverage: |
91.56 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MPMYQVKPYHGG-GAPLRVELPTCMYRLPNVHCRTGSPAPEAGHXXEAPDPSLQALESRQDDI-LKRLYE |
| MPM.QVKPYHGG.G.PLRVELPTC.YRLPN.HCRTGSPA.EAGH..EA.DPSLQALESRQDDI.LKRLYE |
Retrocopy | MPMNQVKPYHGG>GTPLRVELPTCVYRLPNMHCRTGSPALEAGHVQEASDPSLQALESRQDDI>LKRLYE |
|
Parental | LKAAVDGLSKMIHTPDADMDVTNIMQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLCLLVL |
| LKAAVDGLSKMIHTPDADMDVTNIMQADEPT..TTNA.DL.SVLGKDYGALKD.VINANPASPPLCLLVL |
Retrocopy | LKAAVDGLSKMIHTPDADMDVTNIMQADEPTSFTTNAFDLHSVLGKDYGALKDNVINANPASPPLCLLVL |
|
Parental | HRLLCESYRVLSTVHTHSSVKSVPENLLKCFGEQTRKQPRHEYQLGFTLIWKNVPKTQMKFSVQTMCPIE |
| HR.LCESYRVLSTVHTHSSVKSVPE.LLKCFGEQTRK.PRHEYQLGFTLIWKNVPKTQMKFSVQTMC.IE |
Retrocopy | HR*LCESYRVLSTVHTHSSVKSVPETLLKCFGEQTRKEPRHEYQLGFTLIWKNVPKTQMKFSVQTMCSIE |
|
Parental | GEGNIARFLFSLFGQKHNAINSTLIDSWVDIAIFQLKEGSSKEKAAV-FRSMNSALGKSPWLVGNELTVA |
| GEGNIA.FLFSLFGQKHNAINSTLIDS.VDI.IFQLKEGSSKEK.AV.FRSMNSALG.SPWLVGNELT.A |
Retrocopy | GEGNIALFLFSLFGQKHNAINSTLIDSRVDIDIFQLKEGSSKEKVAV<FRSMNSALGRSPWLVGNELTMA |
|
Parental | DVVLWSVLQQTGGCSA |
| DV.LW.V.QQTGGCSA |
Retrocopy | DVALWCVRQQTGGCSA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_923 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_923 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.