>retro_rnor_2324
ATGTAGATGTACCAGGTAAAGCCCTATCATGGAGGCAGCACACCTCTGTGTGTAGAGTTTCCAACCTGCATGTACCGGCC
ACCCAATGTGCACAGGAAGACCACCAGTCCCGCGACCGACGCGGGGCCAAGTGCAGGAAACATTTGAGCCATCTTTGCGA
GCCCTTGAATCTCGGCAGGATGATATTTTAAAGCGCTTGTATGAGTTGAAGGCAGCAGTCGATGGCCTTTCAAAGATGAT
TCACACCCCAGCTGCGGACTTGGACTTAACCAACATCCTGCAAGCTGACAAGCCCACGACATTAACCACAAATGCATTGG
ACTTGTATTGTGTGCTTGGAAAGGATTATGGGGCGCTGAAAGACATCGTGATCAAAGCAAACCCAGCCTCCCCACCCCTG
TTCCTATTTGTACTGCACAGGCTGCTCTGTGAATGCTACAGGGTTCTGTCCACAACACACACATATTCGTCTGTTAAGAA
TGTACCTGAGAATCTTCTCAAGTGCTTCGGGGAGCAGGCTGGAAAACAGTCCCACAATGGCTATCAGCTGGGCTTCGCTC
TGATTTGGAAGAATGTGCCCAAGACATAGGTGAAGTTCACTGTAGAAACAATGTGCCCCATCGAAGGAGAGGGGAACATC
GCACGTTTC
ORF - retro_rnor_2324 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.18 % |
Parental protein coverage: |
67.5 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MPMYQVKPYHGGSAPLRVELPTCMYRLPNVHSKTTSPATDAG-HVQEPSEPSLRALESRQDDILKRLYEL |
| M.MYQVKPYHGGS.PL.VE.PTCMYR.PNVH.KTTSPATDAG..VQE..EPSLRALESRQDDILKRLYEL |
Retrocopy | M*MYQVKPYHGGSTPLCVEFPTCMYRPPNVHRKTTSPATDAG>QVQETFEPSLRALESRQDDILKRLYEL |
|
Parental | KAAVDGLSKMIHTPDADLDVTNILQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLLVLH |
| KAAVDGLSKMIHTP.ADLD.TNILQAD.PTTLTTNALDL..VLGKDYGALKDIVI.ANPASPPL.L.VLH |
Retrocopy | KAAVDGLSKMIHTPAADLDLTNILQADKPTTLTTNALDLYCVLGKDYGALKDIVIKANPASPPLFLFVLH |
|
Parental | RLLCERYRVLSTVHTHSSVKNVPENLLKCFGEQARKQSRHEYQLGFTLIWKNVPKTQMKFSVQTMCPIEG |
| RLLCE.YRVLST.HT.SSVKNVPENLLKCFGEQA.KQS...YQLGF.LIWKNVPKT..KF.V.TMCPIEG |
Retrocopy | RLLCECYRVLSTTHTYSSVKNVPENLLKCFGEQAGKQSHNGYQLGFALIWKNVPKT*VKFTVETMCPIEG |
|
Parental | EGNIARF |
| EGNIARF |
Retrocopy | EGNIARF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
15 .96 RPM |
SRP017611_kidney |
0 .00 RPM |
21 .77 RPM |
SRP017611_liver |
0 .00 RPM |
6 .05 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2324 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2324 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2324 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.