RetrogeneDB ID: | retro_itri_929 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393345.1:2800041..2800372(-) | ||
Located in intron of: | ENSSTOG00000002689 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA0101 | ||
Ensembl ID: | ENSSTOG00000019643 | ||
Aliases: | None | ||
Description: | KIAA0101 [Source:HGNC Symbol;Acc:28961] |
Percent Identity: | 69.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVRTKADSV-PGTYRKVVASRAPRKIL-GSSSSATNSASLSSRKAENKYAGGNPVCVRPTP-KWQKGIGE |
...TKAD.V..GTYRKVVA.RAPR....GSS.S.TNS.SLSSRKAENK.AG.NPVCV.PTP.KWQK.... | |
Retrocopy | LMPTKADCV<LGTYRKVVA-RAPRLLAPGSSTSVTNSLSLSSRKAENKCAGRNPVCVCPTP<KWQKKKRG |
Parental | FFRLSPKDSEKENRIPEEPGSSGLGKAKRKACPLQPDHTDDEKE |
..RLSP.DSE.EN.IPE..GSSG.G.AKR.ACPLQ.DH.DD.KE | |
Retrocopy | LSRLSPEDSEREN*IPEAAGSSGSGRAKRRACPLQLDHIDDKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010763 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006482 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000014912 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000027710 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040204 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000003982 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016561 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019643 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000013732 | 2 retrocopies |