RetrogeneDB ID: | retro_itri_974 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393353.1:8050366..8050744(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF11 | ||
Ensembl ID: | ENSSTOG00000020072 | ||
Aliases: | None | ||
Description: | ring finger protein 11 [Source:HGNC Symbol;Acc:10056] |
Percent Identity: | 70.9 % |
Parental protein coverage: | 85.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDG |
DRASFGE.TE.DQEP....QEQ..VPV..P....T.......EEEQIR.AQRIGL.QHLPKG.YDPGRDG | |
Retrocopy | DRASFGEETEQDQEPL--HQEQ--VPV--PMYRPTPDSASNSEEEQIRTAQRIGLTQHLPKGAYDPGRDG |
Parental | SEKKI-RECVICMMD-FVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDVALLSSYET |
S.KK..RECVI..MD..VYGD.IRFLPCMHIYHL.C..DWLM.S.TCPSCMEPVD.ALL.SYET | |
Retrocopy | SGKKL<RECVISVMD>LVYGDSIRFLPCMHIYHLGCSGDWLMSSSTCPSCMEPVDAALLLSYET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000006072 | 1 retrocopy | |
Homo sapiens | ENSG00000123091 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004919 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004439 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011682 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001361 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000041089 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020072 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000010211 | 1 retrocopy |