RetrogeneDB ID: retro_mluc_145

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02067406:2184..2649(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005197
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RNF11
• Ensembl ID: ENSMLUG00000004439
• Aliases: None
• Description: None

Sequence

>retro_mluc_145
ATGGGGAACTGCCTCAGATCCCCCACTTCGGATGACATCTCTCTGATCCACGAGTCTCAGTCCGACCGGGTTAGTTTCGG
CGAAGGGACGGAGCCGGACCAGGAGCCGCCGCCTCCATATCAGGAACAAGTTCCAGTTCCGGTCTATCATCCAACACCTA
GCCAGACTCGCCTAGCAACTCAGCTGACTGAAGAGGAACAAATTAGGATAGCTCAAAGAATAGGCCTTATACAACATCTG
CCTAAAGGAGTTTATGACCCTGGAAGAGATGGATCAGAAAAAAAGATCCGGGAGTGTGTGATCTGTATGACGGACTTTGT
TTATGGGGACCCAATTCGATTTCTGCCGTGCATGCACATCTGTCACCTGGACTGTATAGATGACTGGTTGATGAGATCCT
TCACATGCCCCTCCTGCATGGAGCCAGTTGATGCAGCACTGCTTTCGTCCTATGAGACTAATTGA

Alignment

ORF - retro_mluc_145 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.75 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRI
          MGNCL.SPTSDDISL.HESQSDR.SFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRI
Retrocopy MGNCLRSPTSDDISLIHESQSDRVSFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRI

Parental  AQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCM
          AQRIGLIQHLPKGVYDPGRDGSEKKIRECVICM.DFVYGDPIRFLPCMHI.HLDCIDDWLMRSFTCPSCM
Retrocopy AQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMTDFVYGDPIRFLPCMHICHLDCIDDWLMRSFTCPSCM

Parental  EPVDAALLSSYETN
          EPVDAALLSSYETN
Retrocopy EPVDAALLSSYETN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_145 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000508	1 retrocopy	retro_chof_2585,
Echinops telfairi	ENSETEG00000006072	1 retrocopy	retro_etel_873,
Homo sapiens	ENSG00000123091	1 retrocopy	retro_hsap_3925,
Gorilla gorilla	ENSGGOG00000004919	1 retrocopy	retro_ggor_2641,
Myotis lucifugus	ENSMLUG00000004439	1 retrocopy	retro_mluc_145 ,
Otolemur garnettii	ENSOGAG00000011682	1 retrocopy	retro_ogar_2003,
Pongo abelii	ENSPPYG00000001361	1 retrocopy	retro_pabe_3241,
Pan troglodytes	ENSPTRG00000041089	1 retrocopy	retro_ptro_2669,
Ictidomys tridecemlineatus	ENSSTOG00000020072	4 retrocopies	retro_itri_1747, retro_itri_1886, retro_itri_633, retro_itri_974,
Tursiops truncatus	ENSTTRG00000010211	1 retrocopy	retro_ttru_1644,