RetrogeneDB ID: | retro_lafr_431 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_16:51233864..51234157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000030902 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000017117 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.35 % |
Parental protein coverage: | 79.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKKDAGKSAKKDKDPVNKSGGKAKKKQKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP-AVVSE |
......KSAKKDKDPVN...GKAKKK.KWSKGKV.DKL.NLV.FDKAT.DK.CKEVPN..LIT...V.SE | |
Retrocopy | REDGTAKSAKKDKDPVNNHVGKAKKK-KWSKGKVPDKLGNLVFFDKATCDKFCKEVPNSNLITA<IVLSE |
Parental | RLKIRGSLARAALQELLSKGLIKLVSKHRAQ |
...I.GSLA.AALQ...SKGLIK..S....Q | |
Retrocopy | -MEIGGSLAGAALQTVPSKGLIKCNSRWKHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000051 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000013298 | 2 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000017117 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000004752 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000013334 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004960 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Sus scrofa | ENSSSCG00000015103 | 12 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |