RetrogeneDB ID: | retro_fcat_601 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:20400644..20401014(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.8 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKEQKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLIT |
PPKD.KKKKDAG.SAK.DKDPVNKS..KAKK...K.SKGK..D.LNNLV.FDK.T.DKLCKE..NY.LIT | |
Retrocopy | PPKDYKKKKDAGWSAKEDKDPVNKSWDKAKK---K*SKGKFQDRLNNLVSFDKVTHDKLCKETSNYTLIT |
Parental | PA-VVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
.A..VSERLKI.GSLARAALQE.LSK.L.KLVSK.R.QV.YTRNTK.GDAP.A.E.A | |
Retrocopy | TA>IVSERLKI*GSLARAALQEHLSKRLNKLVSKQRIQVSYTRNTKDGDAPVADEYA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 172 .83 RPM |
SRP017611_liver | 0 .00 RPM | 127 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000051 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000013298 | 2 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies |
retro_fcat_1792, retro_fcat_601 , retro_fcat_903,
|
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000017117 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000004752 | 15 retrocopies | |
Macaca mulatta | ENSMMUG00000016894 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013334 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004960 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Sus scrofa | ENSSSCG00000015103 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020783 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |