>retro_lafr_466
GAGGAAGAGATGGAGGACAGGAGGGAGACGCCCGAGGACAGGGAGGTCCGGCAGCAGCTGATGTGGAAGAGGGACGTATG
TCTTCTTCGAAGACAAACACAAACATCTTTGCAAGTTTCCCTGCTAGAAAAGTATTCGTGTTCCAAGTTTATAATTGCTG
TAGAAAATAACACAGTAGCATTTTTGTCGTCATTTGTTATGAACTCAGGCGTCTGGGAGGAAGTTTGTTGTGCTAAACTG
TGGAATGAATGGTGTAGAACCACAGATGCTGTTAGCCTGTCCCCCACAGAGGCTTTTTGTGTGTTTTATCATCTAAAATC
AAATCCTTCAGTTTTCCTTTGTCAGTGCAGTTGGTATGTTGCCGAAGATCAGCAGTATCAGTGGCTGGAAAAGGCTTTTG
GCTCTTGTCCAAAGAAGAACACACAGGTAACTATTCTCATGGGTCGAAATATCACTGACTACAAAACTTCAGAGTCTACC
TGCAGCCTGCCATCTCCTTTCCTGAGAGACCCTGAAAACACAGAATTTCAAAGATCCTGTGTGTTGTTCGCTGCTGGAAC
AGCCGAAAATCGTACATGACCTTCCTGCAGCGGTTCTGAGTTACTGTCAAGTGTGGCGAATTCCTGCAATTCTGTACTTG
TGTTATACTGATGTTATGAAACTTGAGCCCATTACAGTAGAAGCGTTTAAGCCTATACTTTCTTCCAGAAGCTTGAAAGG
TTTGGTTAAGACTATTCCCCAGAGCACAGAGATGCTGAAGAAACTGATGGCCACAAATGAGACTCAGAGCAACATACACA
CA
ORF - retro_lafr_466 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.22 % |
Parental protein coverage: |
93.06 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EEEEEDRRETPEDREVRRQLMRKSREVRLLRRQTKTSLEVSLLEKYSCSKFIIAIGNNAVAFLSSFVMNS |
| EEE.EDRRETPEDREVR.QLM.K.R.V.LLRRQT.TSL.VSLLEKYSCSKFIIA..NN.VAFLSSFVMNS |
Retrocopy | EEEMEDRRETPEDREVRQQLMWK-RDVCLLRRQTQTSLQVSLLEKYSCSKFIIAVENNTVAFLSSFVMNS |
|
Parental | GIWEEVGCAKLWNEWCRTTDAVSLSPTEAFCVFYHLKSNPSVFLCQCSCYVAEDQQYQWLEKVFGSCPKK |
| G.WEEV.CAKLWNEWCRTTDAVSLSPTEAFCVFYHLKSNPSVFLCQCS.YVAEDQQYQWLEK.FGSCPKK |
Retrocopy | GVWEEVCCAKLWNEWCRTTDAVSLSPTEAFCVFYHLKSNPSVFLCQCSWYVAEDQQYQWLEKAFGSCPKK |
|
Parental | NMQVTILTSRHITDYKTSESTCSLPSPFLR-ALKTQNFKDPVCCSLLEQPNIVHDLPAAVLSYCQVWRIP |
| N.QVTIL..R.ITDYKTSESTCSLPSPFLR..LKTQNFKDPVCCSLLEQP.IVHDLPAAVLSYCQVWRIP |
Retrocopy | NTQVTILMGRNITDYKTSESTCSLPSPFLR>TLKTQNFKDPVCCSLLEQPKIVHDLPAAVLSYCQVWRIP |
|
Parental | AILYLCYTDIMKLDPITVEAFKPVLSSRSLKGLVKNIPQSTEMLKKLMVTNEIQSNIYT |
| AILYLCYTD.MKL.PITVEAFKP.LSSRSLKGLVK.IPQSTEMLKKLM.TNE.QSNI.T |
Retrocopy | AILYLCYTDVMKLEPITVEAFKPILSSRSLKGLVKTIPQSTEMLKKLMATNETQSNIHT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_466 was not experimentally validated.
Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.