RetrogeneDB ID: | retro_lafr_542 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_20:7402975..7403268(-) | ||
Located in intron of: | ENSLAFG00000028585 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | URM1 | ||
Ensembl ID: | ENSLAFG00000002178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.29 % |
Parental protein coverage: | 97.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PLSVEVEFGGGAELLFNGVKKHQVTLPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGI-LVLIN |
PLSV.VE...G.ELLF.G.K..QVTL.GQEEPWDI.NLL.W.KKNLLKE.P.LF.QGDSVR.GI..VL.N | |
Retrocopy | PLSVKVELRSGTELLFDGMKRRQVTLLGQEEPWDIQNLLAWTKKNLLKEQPDLFTQGDSVRLGI<CVLMN |
Parental | DADWELLDQGELDYQLQDQDSVLFISTLHGG |
D.DWEL...GE.DYQ..DQD.VLF.STLHGG | |
Retrocopy | DTDWEL--PGEADYQHRDQDGVLFMSTLHGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000025612 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000012945 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002178 | 1 retrocopy |
retro_lafr_542 ,
|
Macropus eugenii | ENSMEUG00000014147 | 1 retrocopy |