RetrogeneDB ID: | retro_lafr_625 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_26:33127882..33128188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS1 | ||
Ensembl ID: | ENSLAFG00000016073 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MIETLGSLPTQMDYK-GQKLAEQMFQGIILS-SAIVGFVYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWP |
..E.LG.LPT.M.YK.G.KLA.QMF.GI.L..SAIVGF..GYVAEQF..TVYIV.AGFAF.CLLTL.PWP | |
Retrocopy | VLEHLGLLPTRMNYK<GRKLAKQMFHGIMLF>SAIVGFICGYVAEQFRCTVYIVLAGFAFWCLLTLTPWP |
Parental | IYRRHPLKWLPVQDSGTEDKKPGDRKIKRHAKNN |
IYR.HP.KWLPVQ.SG.E.KKPGD.KIKRHAKNN | |
Retrocopy | IYREHPYKWLPVQGSGAEGKKPGDGKIKRHAKNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000012421 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000000678 | 4 retrocopies | |
Equus caballus | ENSECAG00000023559 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007914 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004020 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016073 | 2 retrocopies |
retro_lafr_575, retro_lafr_625 ,
|
Mus musculus | ENSMUSG00000021917 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007380 | 1 retrocopy |