RetrogeneDB ID:

retro_lper_26

Retrocopy
location
Organism:Leersia perrieri
Coordinates:8:5466970..5467840(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:LPERR08G06310
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:LPERR04G20020
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lper_26
ATGGCCGTGGACCTCATGGGCTTCAGCCCCCGCGGCGCCTGCCCTCCTCCTCTCCCCTCCTCCTCCTCCGACGACGACGC
CAGGGAGCAGCTCGCGTTCCAGGAAGCCGCCGCCGCCGGCCTCCGCAGCCTCGAGCTCCTCGTCTCCTCCCTTTCCGGCT
CCGCCGCCGATCTCCACCGTCTCCCTTCCCCGCCGCTCGGGGAGATCACCGACCAGGCCGTCTTCCGCTTCCGCAAGGTC
ATCTCCATCCTCGACCGCACCGGCCACGCCCGCTTCCGCCGCGCCCCTACCGCCGCATCCTCGCCGCCGTCGCCGTCATC
TCCGCCTCCTCCTCCTCCCCCTCCGGCGACGCCGCATCCGAAGACCCTGAACCTCGATTTCACCAAAGCGGCGGCGGCAA
CAGCGTCGGCGTCGTTAATCTCGTCGGTAACAGCCGGCGGAGGCGGCGGAGGGGAAGGAAGCGTATCAAAGGGGAAAAGC
CTCATCTCCACAGGAAAACCCCCACTCGCCGGCGGCGCCAAGCGCAAGCCGCCGCCGCCGACGACGGCGTGCGAGGGACA
CGTGGCGGGGCACGGGGGATGCCACTGCGCGGCGGGGAAGAAGAGGAAGCAGCATCATCATCGAGGGGCTCGGAGGACGG
TGAGGGTGGCGGCGGCGAGCGAGCGGGTGGCGGATATTCCGGCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCG
ATCAAGGGCTCGCCATACCCGCGCGGCTACTACCGCTGCAGCTCCGTCAAGGGCTGCCCCGCAAGGAAGCATGTCGAGCG
CGCCGCCGACGACCCCGCCGTCCTCCTCGTCACCTACGACGGCGACCACCGCCACTCGCCGCCGGCCTAA

ORF - retro_lper_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.33 %
Parental protein coverage: 58.31 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAPPPPPAPVVAAVAPLAIGPTSSSQPQSLTLDFTKPNLMAMSAATSVTSTSFFSSVTAGEGSVSKGRSLL
AP.....P......P....P.....P..L.LDFTK....A..A..S..S.........GEGSVSKG.SL.
RetrocopyAPTAASSPPSPSSPPPPPPPPATPHPKTLNLDFTKA--AAATASASLISSVTAGGGGGGEGSVSKGKSLI
ParentalSSGKPPLSGH-KRK--PCAGGHSEATANGSRCHCS--KRRKNR----VKRTIRVPAISSKIADIPPDEYS
S.GKPPL.G..KRK..P.........A....CHC...K.RK........RT.RV.A.S...ADIP.DEYS
RetrocopySTGKPPLAGGAKRKPPPPTTACEGHVAGHGGCHCAAGKKRKQHHHRGARRTVRVAAASERVADIPADEYS
ParentalWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPAMLVVTYEGEHRHTP
WRKYGQKPIKGSPYPRGYY.CS.V.GCPARKHVERA.DDPA.L.VTY.G.HRH.P
RetrocopyWRKYGQKPIKGSPYPRGYYRCSSVKGCPARKHVERAADDPAVLLVTYDGDHRHSP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Leersia perrieri was not studied using RNA-Seq expression data.
Leersia perrieri was not studied using ChIP-Seq data.
Leersia perrieri was not studied using EST data.
Leersia perrieri was not studied using FANTOM5 data.
retro_lper_26 was not experimentally validated.

Retrocopy orthology:
Leersia perrieri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Leersia perrieri LPERR04G20020 1 retrocopy
retro_lper_26 ,
Oryza punctata OPUNC04G218801 retrocopy
Oryza rufipogon ORUFI04G260701 retrocopy
Oryza sativa japonicaOS04G06051001 retrocopy



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