>retro_osat_10
CTCACAATCTCACCCTCAACTCACCACCCAACCCAACTCAAGCACCTCCTCCTCCTCCACCGGCAAACGCAGCAGCGGCG
CGCGCGCTCTCGCCTCCGTCTCCGGCGACCCATGGCCGTGGACCTCATGGGCTTCAGCCCGCGCGGCGGCTGCCGCCCGT
CCGTGGAGACGGAGCAGCTCGCTTTCCAGGAGGCCGCCGCCGCGGGGCTCCGCAGCCTCGAGCTGCTCGTCTCGTCGCTC
TCCGCCGGGGGGGAGCACCACCACCGCCGCCGCCCGCAGGAGAAGCAGTCTTCGCCGCCGCTGGGGGAGATCGCGGACCA
GGCGGTGTCCAGGTTCAGGAAGGTGATCTCGATTCTTGACCGGACCGGCCACGCCCGCTTCCGCCGTGGCCCTGTCGTCG
GAGCGGCAGCTGCGGAGGCGGCTGCCGCGGCGGCGTCGGCGTCACCGTCGTCGTCTCCTGTCTCGCCGCCTCTCCCGCCG
GTGACGACGCAGCCGGCGGCCGCCGTGAAGAGCCTGACGCTGGACTTCACGAATCCCGCCAAGGTCGCGGCGGCGTCGGT
GACCTCGACGTCGTTCTTCTCGTCGGTCACCGCCGGCGGAGACGGCAGCGTGTCCAAGGGCCGGAGCCTGGTCTCCTCCG
GGAAGCCCCCGCTCGCCGGCGGCGTCAAGCGCAAGCACCCGCACCCGCCCTGCGCCGCCGCCGGCGACGGCCACGGCCAC
GGCGCAGGCCACGCGCACGCGCACGGCGGGTGCCACTGCTCCAAGAAGCGGAAGCAGCGGGTTCGGCGCACGGTGCGCGT
GGCGGCGGCGAGCGCGCGGGTGGCGGACATCCCCGCCGACGAGTACTCGTGGCGCAAGTACGGGCAGAAGCCGATCAAGG
GGTCCCCCTACCCGCGCGGCTACTACCGGTGCAGCACCGTCAAGGGTTGCCCCGCCCGGAAGCACGTCGAGCGCGCCGCC
GACGACCCCGCCACCCTCGTCGTCACCTACGAGGGCGACCACCGCCACTCGCCGCCGCCGCCGCCGCTTGTTTAA
ORF - retro_osat_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.55 % |
Parental protein coverage: |
90.29 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GCYAPRRADDQLAIQEAATAGLRSLEMLVSSLSSSSQAAGAHKASPQQQ----PFGEIADQAVSKFRKVI |
| GC..P.....QLA.QEAA.AGLRSLE.LVSSLS........H...PQ......P.GEIADQAVS.FRKVI |
Retrocopy | GC-RPSVETEQLAFQEAAAAGLRSLELLVSSLSAGGEHH--HRRRPQEKQSSPPLGEIADQAVSRFRKVI |
|
Parental | SILDRTGHARFRRGPVESSAPAAPVAAAPPPPPPPPAPVAAALAPTSSQP----QTLTLDFTKPNLTMSA |
| SILDRTGHARFRRGPV...A.AA..AAA.....P...PV...L.P...QP......LTLDFT.P.....A |
Retrocopy | SILDRTGHARFRRGPVVGAA-AAEAAAAAASASPSSSPVSPPLPPVTTQPAAAVKSLTLDFTNP--AKVA |
|
Parental | ATSVTSTSFFSSVTA-GEGSVSKGRSLLSSGKPPLSGH-KRK----PCAG---GHSEATANG---GRCHC |
| A.SVTSTSFFSSVTA.G.GSVSKGRSL.SSGKPPL.G..KRK....PCA....GH..........G.CHC |
Retrocopy | AASVTSTSFFSSVTAGGDGSVSKGRSLVSSGKPPLAGGVKRKHPHPPCAAAGDGHGHGAGHAHAHGGCHC |
|
Parental | SKRRKNRVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDP |
| SK.RK.RV.RT.RV.A.S...ADIP.DEYSWRKYGQKPIKGSPYPRGYY.CSTV.GCPARKHVERA.DDP |
Retrocopy | SKKRKQRVRRTVRVAAASARVADIPADEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKHVERAADDP |
|
Parental | AMLVVTYEGEHRHTPGPLP |
| A.LVVTYEG.HRH.P.P.P |
Retrocopy | ATLVVTYEGDHRHSPPPPP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza sativa japonica was not studied using RNA-Seq expression data.
Oryza sativa japonica was not studied using ChIP-Seq data.
Oryza sativa japonica was not studied using EST data.
Oryza sativa japonica was not studied using FANTOM5 data.
retro_osat_10 was not experimentally validated.
Retrocopy orthology:
Oryza sativa japonica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.