RetrogeneDB ID: retro_macu_102

Retrocopy location

• Organism: Wild banana (Musa acuminata)
• Coordinates: chrUn_random:131663902..131664206(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GSMUA_AchrUn_randomG26900_001
• Aliases: None
• Description: None

Sequence

>retro_macu_102
AAAAACGTGGCGGTCATAAATTTTGCACAATGTCAAGGTTTGATAGGTTCTTTTTGGACCATCTCAAAAATTCAAAAAAT
TGATCATTCACAAAATATTTACCCTATTGAAGTCCTATGAGAATGGTTTCACAGAAAAACTTGACGGTCATAAAGATTGC
GCAAAGTCGAGGTTCAATCGGTTTTGTATGCACTGTCTCGAAATTTTATTGACCATTCCTAACATATTAGCCCAAGAAAA
TTTGGGCATATTGTTGACAATTCCCAACATATTAGCCCACGAAAATTTGTACAAGCCGAGTAGG

Alignment

ORF - retro_macu_102 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.76 %
• Parental protein coverage: 92.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KNVIVKSFC-NVEVRSIFCALSQKFKILTIPKKFTFRKSYMLGFVKKRGGHKFCTKSRFDRFNRFIMNRL
          KNV.V..F..NV.V.......SQKFK.L.I.K.FT..KSY..GF..K..GHK.C.KS...RFNRF.M..L
Retrocopy KNVAVINFA>NVKV**VLFGPSQKFKKLIIHKIFTLLKSYENGFTEKLDGHKDCAKS---RFNRFCMHCL

Parental  KILLTIPNILAQENLGIMLTIPNILSQENLYKPSR
          .ILLTIPNILAQENLGI.LTIPNIL..ENLYKPSR
Retrocopy EILLTIPNILAQENLGILLTIPNILAHENLYKPSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Musa acuminata was not studied using RNA-Seq expression data.

ChIP-Seq

Musa acuminata was not studied using ChIP-Seq data.

EST

Musa acuminata was not studied using EST data.

TSS

Musa acuminata was not studied using FANTOM5 data.

Lab

retro_macu_102 was not experimentally validated.

Homology

Retrocopy orthology:

Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Musa acuminata	GSMUA_AchrUn_randomG26900_001	7 retrocopies	retro_macu_100, retro_macu_102 , retro_macu_108, retro_macu_110, retro_macu_41, retro_macu_97, retro_macu_98,