RetrogeneDB ID:

retro_macu_98

Retrocopy
location
Organism:Wild banana (Musa acuminata)
Coordinates:chrUn_random:112927840..112928144(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GSMUA_AchrUn_randomG26900_001
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_macu_98
AAAAATGTGGCGGTCATAAATTTTGCACAATGTCAAGGTTTGATAGGTTCTTTTTGAACCATCTCAAAAATTCAAAAAAT
TGATCATTCCCAAAATATTTACCATAGTGAAGTCCTATGAGAATGGTTTCACAGAAAAACTTGACGGTCATAAAGATTGC
GTAAAGTCGTGGTTCAATTGGTTTATTATACACCATCTCGAAATTTTATTGACCATTCCTAACATATTAGCCCAAGAAAA
TTTGGGCATAATGTTGACTATTCCCAACATATTATCTCAAGAAAATTTGTAAAAGCCAAGTAGA

ORF - retro_macu_98 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.71 %
Parental protein coverage: 92.04 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKNVIVKSFC-NVEVRSIFCALSQKFKILTIPKKFTFRKSYMLGFVKKRGGHKFCTKSRFDRFNRFIMNRL
KNV.V..F..NV.V.......SQKFK.L.IPK.FT..KSY..GF..K..GHK.C.KS....FN.FI...L
RetrocopyKNVAVINFA>NVKV**VLFEPSQKFKKLIIPKIFTIVKSYENGFTEKLDGHKDCVKSW---FNWFIIHHL
ParentalKILLTIPNILAQENLGIMLTIPNILSQENLYKPSR
.ILLTIPNILAQENLGIMLTIPNILSQENL.KPSR
RetrocopyEILLTIPNILAQENLGIMLTIPNILSQENL*KPSR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_98 was not experimentally validated.

Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_AchrUn_randomG26900_001 7 retrocopies



Copyright © RetrogeneDB 2014-2017