RetrogeneDB ID:

retro_macu_26

Retrocopy
location
Organism:Wild banana (Musa acuminata)
Coordinates:10:28700854..28701226(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GSMUA_Achr10G24310_001
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_macu_26
AAACTTCGAGGCGAGGTTCTTCTCCACGTTGTAGCATAAGTATCTGGGATCCGCAGATATCACCTTCCTGATACCGGCGC
CGTCGAAGCCCTGAGATCTCAAGAAGTTAAGGACGGCGTCGGGTTTCTCAGTGGCTCGGAGGTGCGCAAGGGGTTTAGAG
ACCTTGGCTGCCTCGGTGGGGGAGAACCCGCAGGAGCTCACGAGGTATTTCACCATGAAGTGGGGATCTGGAGATATGGT
GCCGCCTACGGCGGCCGCAGGGTCGACAGAGGAGGAGAAGAAGAGGAGATCTCGAAGGCGGTGGGTTTCGAACAAGGGAA
GGAGGCCATTGCGGCGGAGCACGGAGCGGAGCGTCGCAGTCGCCATTGTGGG

ORF - retro_macu_26 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.6 %
Parental protein coverage: 64.58 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKARSDFGLFVIN-LAGIRRYHLPDTGAIEALRSHEVKDGVGFLGGSEVRKRLRELGYLGGGEPAGVHEVF
K.R....L.V.....GIRRYHLPDTGA.EALRS.EVKDGVGFL.GSEVRK..R.LG.LGGGEPAG.HEVF
RetrocopyKLRGEVLLHVVA*VSGIRRYHLPDTGAVEALRSQEVKDGVGFLSGSEVRKGFRDLGCLGGGEPAGAHEVF
ParentalHHEVGIWRHGAAYGDGGSVDRGGEEEAISKAAGFEQGKEAIAAEYGAQRRSRHRG
HHEVGIWR.GAAYG.G..VDRGGEEE.ISKA.GFEQGKEAIAAE.GA.RRSRH.G
RetrocopyHHEVGIWRYGAAYG-GRRVDRGGEEEEISKAVGFEQGKEAIAAEHGAERRSRHCG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_26 was not experimentally validated.

Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_Achr10G24310_001 11 retrocopies



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