RetrogeneDB ID:

retro_macu_30

Retrocopy
location
Organism:Wild banana (Musa acuminata)
Coordinates:10:28822576..28823005(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GSMUA_Achr10G24310_001
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_macu_30
ATTCACGATGGCATCGACGATGTACGACTCCGAGAGGCCCAAATCGCGTAAGAACTGAAACTTCGGGGCGAGGTTCTTCT
CCACGTTGCAGCATAGGTAAATGGGGCTCGAAGATATCAACTTCCTGATACCAGCGCCATCGAAGCCCTGAGATCTCATG
AAGTTAAGGATGGCGTCGGGTTTCTTGGTGGATCGGAGGTGCGCAAGGGGTTTAGAGAACTTGGCTGCCTCGGAGGAGGA
GAACCCGCAGGAGTTGACGAGGTATTCCACCATGAAGTGGGGATCTGGAGATATGGTGCCGCCTACGGCGGCGGAAGCGT
TGACAGAGGAGGAGAAGAAGAGGATATCTCGAAGGCGGCAGGTTTCGAAAAAGGGCAGAAGGCTATTGCGGCGGAGTGTG
GAGCGGACCGTCGCAGCCGCCATTGTGGG

ORF - retro_macu_30 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.53 %
Parental protein coverage: 74.48 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVHTNIRDCRGIPSSSALATKARSDFGLFVIN-LAGIRRYHLPDTGAIEALRSHEVKDGVGFLGGSEVRKR
.H..I.D.R......A...K.R....L.V.....G.RRY.LPDT.AIEALRSHEVKDGVGFLGGSEVRK.
RetrocopyIHDGIDDVRLREAQIA*ELKLRGEVLLHVAA*VNGARRYQLPDTSAIEALRSHEVKDGVGFLGGSEVRKG
ParentalLRELGYLGGGEPAGVHEVFHHEVGIWRHGAAYGDGGSVDRGGEEEAISKAAGFEQGKEAIAAEYGAQRRS
.RELG.LGGGEPAGV.EVFHHEVGIWR.GAAYG.GGSVDRGGEEE.ISKAAGFE.G..AIAAE.GA.RRS
RetrocopyFRELGCLGGGEPAGVDEVFHHEVGIWRYGAAYG-GGSVDRGGEEEDISKAAGFEKGQKAIAAECGADRRS
ParentalRHRG
RH.G
RetrocopyRHCG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_30 was not experimentally validated.

Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_Achr10G24310_001 11 retrocopies



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