RetrogeneDB ID: | retro_macu_30 | ||
Retrocopylocation | Organism: | Wild banana (Musa acuminata) | |
Coordinates: | 10:28822576..28823005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | GSMUA_Achr10G24310_001 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.53 % |
Parental protein coverage: | 74.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VHTNIRDCRGIPSSSALATKARSDFGLFVIN-LAGIRRYHLPDTGAIEALRSHEVKDGVGFLGGSEVRKR |
.H..I.D.R......A...K.R....L.V.....G.RRY.LPDT.AIEALRSHEVKDGVGFLGGSEVRK. | |
Retrocopy | IHDGIDDVRLREAQIA*ELKLRGEVLLHVAA*VNGARRYQLPDTSAIEALRSHEVKDGVGFLGGSEVRKG |
Parental | LRELGYLGGGEPAGVHEVFHHEVGIWRHGAAYGDGGSVDRGGEEEAISKAAGFEQGKEAIAAEYGAQRRS |
.RELG.LGGGEPAGV.EVFHHEVGIWR.GAAYG.GGSVDRGGEEE.ISKAAGFE.G..AIAAE.GA.RRS | |
Retrocopy | FRELGCLGGGEPAGVDEVFHHEVGIWRYGAAYG-GGSVDRGGEEEDISKAAGFEKGQKAIAAECGADRRS |
Parental | RHRG |
RH.G | |
Retrocopy | RHCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Musa acuminata | GSMUA_Achr10G24310_001 | 11 retrocopies |
retro_macu_23, retro_macu_26, retro_macu_27, retro_macu_28, retro_macu_29, retro_macu_30 , retro_macu_31, retro_macu_32, retro_macu_33, retro_macu_34, retro_macu_99,
|